BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZC11RM1.SCF screened BAC_end
(959 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1500 1205 0.0
>3x_Contig1500
Length = 9720
Score = 1205 bits (608), Expect = 0.0
Identities = 680/700 (97%), Gaps = 3/700 (0%)
Strand = Plus / Plus
Query: 49 caatctttagtcgatgacttttgtctgcgtggcttttcca-tatttttccgatccatcaa 107
|||||||||||||||||||| ||||||||||||||||||| |||||||||||||||||||
Sbjct: 475 caatctttagtcgatgacttctgtctgcgtggcttttccaatatttttccgatccatcaa 534
Query: 108 catctagtctgtgcccatctagggccacacggaagttcttttcttttgtgacctaatccg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 535 catctagtctgtgcccatctagggccacacggaagttcttttcttttgtgacctaatccg 594
Query: 168 ggtaaaccaatagaattagcgtatttgtttctcaccagcgttttcttatttatggaatgt 227
||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 595 ggtaaaccaatagaattagcgtatttgtttctcaccagcgttttcttatgaatggaatgt 654
Query: 228 ctgggtgtctggaacaactcttttttttctcctgggtattcaagcaaattacataatcgt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 655 ctgggtgtctggaacaactcttttttttctcctgggtattcaagcaaattacataatcgt 714
Query: 288 tgggtacaggttacttttttactttgttcggtgtggattatgtaactcgaaaacaatttt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 715 tgggtacaggttacttttttactttgttcggtgtggattatgtaactcgaaaacaatttt 774
Query: 348 tctttccgagtcatgttctttctttcttcctttctttcttttcatttgctgtccggcgtc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 775 tctttccgagtcatgttctttctttcttcctttctttcttttcatttgctgtccggcgtc 834
Query: 408 agagctactgacagttgagtcttcgacctgaacatccgatagatattaggtaataaatag 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 835 agagctactgacagttgagtcttcgacctgaacatccgatagatattaggtaataaatag 894
Query: 468 ctgttaatgcatcagtatgaaccatacagcgttcggtaaaccgcatactacgccctttta 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 895 ctgttaatgcatcagtatgaaccatacagcgttcggtaaaccgcatactacgccctttta 954
Query: 528 gttaaaagaaagaatgacatgagaatgtgtgaattatgttgtgcgcttttatacaatgat 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 955 gttaaaagaaagaatgacatgagaatgtgtgaattatgttgtgcgcttttatacaatgat 1014
Query: 588 caagcaccatattttaagttctagaacggatcaaagagtgcactgttaacgaccattatt 647
|||||||||||| |||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 1015 caagcaccatatcttaagttctagaacggatcaaagagtgcactgctaacgaccatcatt 1074
Query: 648 tggacgaactacttggtttccatgatggcagtggtattaccatggaagtcttttctattg 707
||||||||||||||||||||||||||||||||| | || |||||||||||| ||||||
Sbjct: 1075 tggacgaactacttggtttccatgatggcagtgtagtaacgatggaagtctttcctattg 1134
Query: 708 gaaatagaagcaatttgtgtttttttttttgagcgtagct 747
| |||| |||||| | ||||| || ||||||||||||||
Sbjct: 1135 g-aataagagcaatct-tgtttcttcttttgagcgtagct 1172
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 13,587
Number of Sequences: 1807
Number of extensions: 13587
Number of successful extensions: 92
Number of sequences better than 1.0e-20: 1
length of query: 959
length of database: 10,358,551
effective HSP length: 16
effective length of query: 943
effective length of database: 10,329,639
effective search space: 9740849577
effective search space used: 9740849577
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)