BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZC12FM1.SCF screened BAC_end
(930 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1640 1546 0.0
>3x_Contig1640
Length = 15521
Score = 1546 bits (780), Expect = 0.0
Identities = 820/831 (98%), Gaps = 2/831 (0%)
Strand = Plus / Plus
Query: 100 aacgttgagttgaatctagagaaagtagagagtattatggatactgctgcagaacagata 159
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5321 aacgttgagttgaatctagagaaagtagagagtattatggatactgctgcagaacagata 5380
Query: 160 gaaattcaaagagagatagacgattctttatcaaacgcggttgtcggatctacgataaat 219
|||||||||||||||||||||||| |||||||||||||||||||||||||||||||||||
Sbjct: 5381 gaaattcaaagagagatagacgatgctttatcaaacgcggttgtcggatctacgataaat 5440
Query: 220 gatgaagttganatagatttggaacagttagaccgtgaggttaacggtaccaaggagact 279
||||||||||| | ||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5441 gatgaagttgatagagaattggaacagttagaccgtgaggttaacggtaccaaggagact 5500
Query: 280 gcacctggtgtgcaagatagactggatcaactcccatcaacaaaggaattgggagaactc 339
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5501 gcacctggtgtgcaagatagactggatcaactcccatcaacaaaggaattgggagaactc 5560
Query: 340 aaggcttcggaaccagaaaaggaaaatggagagtcccaaaaggaaactccaaaagaagaa 399
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5561 aaggcttcggaaccagaaaaggaaaatggagagtcccaaaaggaaactccaaaagaagaa 5620
Query: 400 ccactattagcatgaattagaaaggaaatagtatggaaaatagaatgctctaagttcgtc 459
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5621 ccactattagcatgaattagaaaggaaatagtatggaaaatagaatgctctaagttcgtc 5680
Query: 460 tttgtgaatacaacagtattttgcgtcttgcatttctagctggttgttgaagtttctgta 519
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5681 tttgtgaatacaacagtattttgcgtcttgcatttctagctggttgttgaagtttctgta 5740
Query: 520 ttatttcattcattcaattaattaataatatatacaaaccattttacatttagatttaca 579
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5741 ttatttcattcattcaattaattaataatatatacaaaccattttacatttagatttaca 5800
Query: 580 ggaatgggaaattatactttggcatgtaccctttaattaggcagtgcgtattatgatttc 639
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5801 ggaatgggaaattatactttggcatgtaccctttaattaggcagtgcgtattatgatttc 5860
Query: 640 gcaataggaaagagggctatgaggaaagaagaaaataacaaaagattgtgtcctagaaca 699
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5861 gcaataggaaagagggctatgaggaaagaagaaaataacaaaagattgtgtcctagaaca 5920
Query: 700 tgccatggtcattagaatatgaataaaggtatggagttatgattcgtagatgagtgagtg 759
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5921 tgccatggtcattagaatatgaataaaggtatggagttatgattcgtagatgagtgagtg 5980
Query: 760 gcttcttttttcaattttcgtcaagccattccaaaaattctgggagtgaagtaactgatg 819
||||||||||||||||||||||||||||||||||||||||| ||||||||||||||||||
Sbjct: 5981 gcttcttttttcaattttcgtcaagccattccaaaaattct-ggagtgaagtaactgatg 6039
Query: 820 attaagcgagcaccagcttctgaggaacccatagtgcgattcaaaggccatactttttca 879
||||||||||||||||| |||||||||||||||||||||||||||||| |||||||| |
Sbjct: 6040 attaagcgagcaccagc-tctgaggaacccatagtgcgattcaaaggcaatacttttcaa 6098
Query: 880 atcaacaacacccttctctggcgcagcatgtaacatagcgtattcaccact 930
|||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 6099 atcaacaacacccttctctgcagcagcatgtaacatagcgtattcaccact 6149
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7648
Number of Sequences: 1807
Number of extensions: 7648
Number of successful extensions: 61
Number of sequences better than 1.0e-20: 1
length of query: 930
length of database: 10,358,551
effective HSP length: 16
effective length of query: 914
effective length of database: 10,329,639
effective search space: 9441290046
effective search space used: 9441290046
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)