BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZC12RM1.SCF screened BAC_end
(919 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1581 1441 0.0
>3x_Contig1581
Length = 11429
Score = 1441 bits (727), Expect = 0.0
Identities = 811/834 (97%), Gaps = 4/834 (0%)
Strand = Plus / Minus
Query: 48 gctttaacagaatgcaccaaggtatactggaatcaaagatgtggatttatgagaggtaat 107
|||||||||||||||||||||| | |||||||||||||||||||||||||||||||||||
Sbjct: 6004 gctttaacagaatgcaccaaggaa-actggaatcaaagatgtggatttatgagaggtaat 5946
Query: 108 atgccctacaaattggaaaatacccattgggaaagttgtataccatatgactttagatgg 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5945 atgccctacaaattggaaaatacccattgggaaagttgtataccatatgactttagatgg 5886
Query: 168 taccaggaaagtgtttaatatgcatctcgaaaatgatccattcaaataagtggttttt-t 226
||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 5885 taccaggaaagtgtttaatatgcatctcgaaaatgatccattcaaataagtgggtagaat 5826
Query: 227 tccttccgggaagtttagaactgtattcttcaattttgatgaagatacctgtggtgcatg 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5825 tccttccgggaagtttagaactgtattcttcaattttgatgaagatacctgtggtgcatg 5766
Query: 287 caaatagttagcaaacgttacaaacgcgagacatagcgatgcgcttagaaggaactgcaa 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5765 caaatagttagcaaacgttacaaacgcgagacatagcgatgcgcttagaaggaactgcaa 5706
Query: 347 ttccgttaaaccaacaggatgtggaaatcgggataaaatggcttttgacaggtttgatga 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5705 ttccgttaaaccaacaggatgtggaaatcgggataaaatggcttttgacaggtttgatga 5646
Query: 407 aacagaagaagtcatataccatataaggcataaaatagatatgtgaacattcacttccgg 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5645 aacagaagaagtcatataccatataaggcataaaatagatatgtgaacattcacttccgg 5586
Query: 467 taaatactcttgtacatccttgggaaatagattgacaaattgctctttccacgtctgatt 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5585 taaatactcttgtacatccttgggaaatagattgacaaattgctctttccacgtctgatt 5526
Query: 527 ttgcagtcttctgacctcattgaacgaagttgaatgtttatgagacctgtaattttcctg 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5525 ttgcagtcttctgacctcattgaacgaagttgaatgtttatgagacctgtaattttcctg 5466
Query: 587 gaacggtatttgtacctggttgacaaagttaacatctgaaaatgttttattgatcgaagg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5465 gaacggtatttgtacctggttgacaaagttaacatctgaaaatgttttattgatcgaagg 5406
Query: 647 acggcgcttcgaagtgacgctcttggaagttacaatcatttttcgcttattttattcaca 706
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5405 acggcgcttcgaagtgacgctcttggaagttacaatcatttttcgcttattttattcaca 5346
Query: 707 ccttctttaaattaataaagcgagtggaacgaagttgaatgagaatattttagcanacga 766
||||||| |||| |||||||||||||||||||||||||||||||||| ||||||| ||||
Sbjct: 5345 ccttcttaaaatcaataaagcgagtggaacgaagttgaatgagaataatttagcaaacga 5286
Query: 767 tagattagatcgaaaagaactgttactttatggagcgagcagcgatttttagagcccact 826
|||| |||||||||||||||||||||||||||||||||||||||| |||||||||| |||
Sbjct: 5285 tagaatagatcgaaaagaactgttactttatggagcgagcagcga-ttttagagccgact 5227
Query: 827 gttactatttaagaagtattttttttctttttcaggtcgcaaaaaattgatgcc 880
|| ||||| ||||||||| | | ||||| || || ||||| |||||||||||||
Sbjct: 5226 gtcactatgtaagaagta-tctctttctattacaagtcgccaaaaattgatgcc 5174
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8704
Number of Sequences: 1807
Number of extensions: 8704
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 919
length of database: 10,358,551
effective HSP length: 16
effective length of query: 903
effective length of database: 10,329,639
effective search space: 9327664017
effective search space used: 9327664017
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)