BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD01FM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1782 1265 0.0
>3x_Contig1782
Length = 24703
Score = 1265 bits (638), Expect = 0.0
Identities = 691/706 (97%), Gaps = 2/706 (0%)
Strand = Plus / Plus
Query: 87 taggcatgtaaaactgccaaagggcaaagggtacaggggaaaagagcctgtgttccacta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 604 taggcatgtaaaactgccaaagggcaaagggtacaggggaaaagagcctgtgttccacta 663
Query: 147 ctttgtgaattagaaggccaatatcgatttagcttatgagtcattttctcactatgccga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 ctttgtgaattagaaggccaatatcgatttagcttatgagtcattttctcactatgccga 723
Query: 207 gcgtcaaacccatcatatcgaacagacggtacagtagaaagactgagggtcttgatgaac 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 gcgtcaaacccatcatatcgaacagacggtacagtagaaagactgagggtcttgatgaac 783
Query: 267 aatgggcgattttacaaaatggtatagataagatatttgacggtaaggttactgaactct 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aatgggcgattttacaaaatggtatagataagatatttgacggtaaggttactgaactct 843
Query: 327 cgtttgagaaactatatacaaccgtatatggactggtattgactaagaatggtccacagt 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 cgtttgagaaactatatacaaccgtatatggactggtattgactaagaatggtccacagt 903
Query: 387 tgcatgaacgtctatcgagacagttgtcagatcattttggcaaagtgaggacatcatttg 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 tgcatgaacgtctatcgagacagttgtcagatcattttggcaaagtgaggacatcatttg 963
Query: 447 atggaattacacgggcagaggcattgaatcttttgaaccaagtatgggagaagcaaaaag 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 atggaattacacgggcagaggcattgaatcttttgaaccaagtatgggagaagcaaaaag 1023
Query: 507 tgtatctgagccaaatctcagacgttttcatatatatggattctgtgtactctaaacgag 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 tgtatctgagccaaatctcagacgttttcatatatatggattctgtgtactctaaacgag 1083
Query: 567 aaaataagcctgatgttatgtctttgggttcgaggctattcttgaaggaagtcgtagaac 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 aaaataagcctgatgttatgtctttgggttcgaggctattcttgaaggaagtcgtagaac 1143
Query: 627 acgtttccggtacgcttaagagttctttggttgatgagataaaccagggcagagagagtg 686
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1144 acgtttccggtacgcttaagagttctttggttgatgagataaaccaggcaagagagagtg 1203
Query: 687 cagcacagtactcaggatttgatatactcaagaacgcttttgcagtttcttatattttgg 746
|||||||||||||||||||||||||||||||||||||| |||||||| | ||| |||||
Sbjct: 1204 cagcacagtactcaggatttgatatactcaagaacgctattgcagttcttaatagtttgg 1263
Query: 747 aacttaaagaagggtttagccagcgttttcctgattggaatttgaa 792
| || |||| ||||| | |||||||||||||| |||||||||||
Sbjct: 1264 agctgaaag-agggtatgagcagcgttttcctga-tggaatttgaa 1307
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6711
Number of Sequences: 1807
Number of extensions: 6711
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)