BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD01RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1497 1376 0.0
>3x_Contig1497
Length = 11582
Score = 1376 bits (694), Expect = 0.0
Identities = 761/777 (97%), Gaps = 5/777 (0%)
Strand = Plus / Minus
Query: 47 tggctggtcttcgtaaaagacaaggtattgatgttgaagaagagggtgccctagaaaagg 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5547 tggctggtcttcgtaaaagacaaggtattgatgttgaagaagagggtgccctagaaaagg 5488
Query: 107 aaggaattgctcaagataaagaaattatgttagcaaatttgaaaatcttaggagagaact 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5487 aaggaattgctcaagataaagaaattatgttagcaaatttgaaaatcttaggagagaact 5428
Query: 167 ctcagttacgcccagaaaatgtgacatttgtcagtaaagagttcgtacaagataccgctg 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5427 ctcagttacgcccagaaaatgtgacatttgtcagtaaagagttcgtacaagataccgctg 5368
Query: 227 gtgctaatggagaaacgcaaaagaaatgcaatgaaaatttcatgttagcactagcacttt 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5367 gtgctaatggagaaacgcaaaagaaatgcaatgaaaatttcatgttagcactagcacttt 5308
Query: 287 gtcacactgttcttgtggaagaaaacaaagatgatccagaaattatggatttcaaggctc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5307 gtcacactgttcttgtggaagaaaacaaagatgatccagaaattatggatttcaaggctc 5248
Query: 347 aatctccagacgaagcagctcttgttggtactgcaagagacatgggtttcagctttgttg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5247 aatctccagacgaagcagctcttgttggtactgcaagagacatgggtttcagctttgttg 5188
Query: 407 gtagaaccaaaaacggggtaattgtcgatattcagggagttcagaaggaatacagattac 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5187 gtagaaccaaaaacggggtaattgtcgatattcagggagttcagaaggaatacagattac 5128
Query: 467 tcaatgtgttggaattcaactctactagaaagagaatgtcatgcattctaaaaattccat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5127 tcaatgtgttggaattcaactctactagaaagagaatgtcatgcattctaaaaattccat 5068
Query: 527 ctgaaaatccaaacgaagaaccaagagctttgctaatctgtaaaggtgcagactcgatca 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5067 ctgaaaatccaaacgaagaaccaagagctttgctaatctgtaaaggtgcagactcgatca 5008
Query: 587 tctattccagacttaagta-gaacaatgatgaaaagctactagaaaagacggtcttgcat 645
||||||||||||| ||||| |||||||||||||||||||||||||||||||| |||||||
Sbjct: 5007 tctattccagact-aagtaagaacaatgatgaaaagctactagaaaagacggccttgcat 4949
Query: 646 ttgg-acaatatgccacangaggtttaagaactctatgtattgcccaaagagaattgtca 704
|||| ||||||||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 4948 ttggaacaatatgccacagaaggtttaagaactctatgtattgcccaaagagaattgtca 4889
Query: 705 tggaaagattacctagaatggaacg-aaaacatgagattgcagctggtgcccttgttgat 763
|||||||| |||| ||||||||||| |||||||||||||||||||| |||||||||||||
Sbjct: 4888 tggaaagaataccaagaatggaacgaaaaacatgagattgcagctgctgcccttgttgat 4829
Query: 764 ccggaagatgaaatggaaaaggtccctggtgtcatcgaacggtgagttaactttgct 820
| ||||||||||||||||||||| ||| ||| ||||||| ||||||||||||||||
Sbjct: 4828 cgtgaagatgaaatggaaaaggtcgctgatgtaatcgaac-gtgagttaactttgct 4773
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7287
Number of Sequences: 1807
Number of extensions: 7287
Number of successful extensions: 58
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)