BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD02FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1068 833 0.0
3x_Contig244 131 3e-30
>3x_Contig1068
Length = 5568
Score = 833 bits (420), Expect = 0.0
Identities = 433/436 (99%), Gaps = 1/436 (0%)
Strand = Plus / Minus
Query: 87 taactccaactgcaagcaataagaacacagaagggccaatcacgttagaagatcaagata 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 taactccaactgcaagcaataagaacacagaagggccaatcacgttagaagatcaagata 376
Query: 147 ttatcacagattctgatttggatatttaatcgcaggttgtgtttgtacaactgaccacta 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 ttatcacagattctgatttggatatttaatcgcaggttgtgtttgtacaactgaccacta 316
Query: 207 cttaaatattatttttttcaagcaacaagacgtatatttactacttccagaacacagttg 266
|||||||||||||| | ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 315 cttaaatattatttcct-caagcaacaagacgtatatttactacttccagaacacagttg 257
Query: 267 tcaccacatcgagtattttaaaaaaattcagctattgttgtacatgtttatcttcaattg 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 256 tcaccacatcgagtattttaaaaaaattcagctattgttgtacatgtttatcttcaattg 197
Query: 327 aaatttaaactttcagataatgtagataaggttaataatgatatatctcatcatctcgag 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 196 aaatttaaactttcagataatgtagataaggttaataatgatatatctcatcatctcgag 137
Query: 387 gggatacctgtgtttagttaggtaagacattttacatgaatccacattcagtaatgattc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 136 gggatacctgtgtttagttaggtaagacattttacatgaatccacattcagtaatgattc 77
Query: 447 ttttgatccttcaaaagataaaaaaacacacaaatcaagatgtaattgaaccatcacaac 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 76 ttttgatccttcaaaagataaaaaaacacacaaatcaagatgtaattgaaccatcacaac 17
Query: 507 tgaacgtattcagaga 522
||||||||||||||||
Sbjct: 16 tgaacgtattcagaga 1
>3x_Contig244
Length = 1487
Score = 131 bits (66), Expect = 3e-30
Identities = 89/94 (94%), Gaps = 2/94 (2%)
Strand = Plus / Minus
Query: 631 atataggaaagaccaataaaattttcagtttttctcctgttactaaaattcaagaagcga 690
||||||||| |||||||||||||||||||||||| |||||||||||||||||||||||||
Sbjct: 1260 atataggaatgaccaataaaattttcagtttttc-cctgttactaaaattcaagaagcga 1202
Query: 691 cattttgaaaagacaacaggggggaaatactaga 724
||||| |||||||||||| | |||||||||||||
Sbjct: 1201 catttcgaaaagacaaca-gtgggaaatactaga 1169
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8104
Number of Sequences: 1807
Number of extensions: 8104
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 2
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)