BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD02RM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1765 1360 0.0
>3x_Contig1765
Length = 24733
Score = 1360 bits (686), Expect = 0.0
Identities = 773/793 (97%), Gaps = 7/793 (0%)
Strand = Plus / Plus
Query: 49 cggttaacggtgaaatctaaggggcgcaacttttgagataaaagaagttatttaatgctc 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17602 cggttaacggtgaaatctaaggggcgcaacttttgagataaaagaagttatttaatgctc 17661
Query: 109 tgattcattacaagctacatgtatatagatttgtataatgttatattcgcgtcttacgta 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17662 tgattcattacaagctacatgtatatagatttgtataatgttatattcgcgtcttacgta 17721
Query: 169 taatcatacattatgaatgctatttcatacccgtcgaataaattcaggtatatatatata 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17722 taatcatacattatgaatgctatttcatacccgtcgaataaattcaggtatatatatata 17781
Query: 229 aacaaaagtacggtattggtacacaaataatgggtaattcttttttattatcgtatagac 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17782 aacaaaagtacggtattggtacacaaataatgggtaattcttttttattatcgtatagac 17841
Query: 289 atgattaatacacagaaacagcacaaacaatacattgtatttaaatacaattgagccgca 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17842 atgattaatacacagaaacagcacaaacaatacattgtatttaaatacaattgagccgca 17901
Query: 349 tatgtgattgattgatgagatttcaaataagtgagttgaaaataaataggagtagaggga 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17902 tatgtgattgattgatgagatttcaaataagtgagttgaaaataaataggagtagaggga 17961
Query: 409 aaaacagctaacaacaaataagatgaacatcaatgcgcagatattcacgctttatggtca 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 17962 aaaacagctaacaacaaataagatgaacatcaatgcgcagatattcacgctttatggtca 18021
Query: 469 tatatgttttaccctttttatctcttgaatcgagtgagattccgatagcgaaaaggatga 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18022 tatatgttttaccctttttatctcttgaatcgagtgagattccgatagcgaaaaggatga 18081
Query: 529 atgttatgaaaatctgagaacatcattccaaagttgatgtcctaggcctggtagacgtat 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 18082 atgttatgaaaatctgagaacatcattccaaagttgatgtcctaggcctggtagacgtat 18141
Query: 589 ggagtgccggatagataaatgtttcccgacagtagcgtatccacatttttaaaatatgtt 648
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 18142 ggagtgccggatagataaatgtttcccgacagtagcgtatccacatttttaaaatatg-t 18200
Query: 649 tttgaagtgacggtatattcttaagagtaaaataattgaacaaaagcatcattgaaaaga 708
||||||||||||||||||||| | |||||||||||||||||||||||||| ||||||||
Sbjct: 18201 tttgaagtgacggtatattctaagaagtaaaataattgaacaaaagcatcaatgaaaaga 18260
Query: 709 cactttaaagtataatgattgag-aatgatntatttcaaatgttaaaagaaacttattca 767
||||| |||||||||||| |||| |||||| || ||||||||| |||||||||||||||
Sbjct: 18261 cacttaaaagtataatga-tgagaaatgatataattcaaatgtcaaaagaaacttattc- 18318
Query: 768 atcggc-tcttcatcttcttcaccaccgtttatgatacca-ccttgaaatttttcc-tta 824
|||| | ||||||||||||||||||||||| ||||||||| |||||| || ||||| | |
Sbjct: 18319 atcgtcttcttcatcttcttcaccaccgttcatgataccacccttgatatctttccataa 18378
Query: 825 cttacctttgttg 837
|||||||||||||
Sbjct: 18379 cttacctttgttg 18391
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,553
Number of Sequences: 1807
Number of extensions: 10553
Number of successful extensions: 83
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)