BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD03FM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1687 1451 0.0
>3x_Contig1687
Length = 12800
Score = 1451 bits (732), Expect = 0.0
Identities = 766/776 (98%), Gaps = 1/776 (0%)
Strand = Plus / Minus
Query: 86 cctcaatttctcaaatct-atctaccacccaacagggagtcgagccaaccaccacatctg 144
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 10508 cctcaatttctcaaatctcatctaccacccaacagggagtcgagccaaccaccacatctg 10449
Query: 145 gttctacttcttctccagattccatcagttctactacaacgatttcttcgacaaaaactg 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10448 gttctacttcttctccagattccatcagttctactacaacgatttcttcgacaaaaactg 10389
Query: 205 ttgtgaacggcaaagtcagtatcgctagttctactgacgtaacaacatctcaacaagcag 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10388 ttgtgaacggcaaagtcagtatcgctagttctactgacgtaacaacatctcaacaagcag 10329
Query: 265 taacacagtctactgctatcagtgtcactagctcaaccgaggtaaccacatctcaacagc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10328 taacacagtctactgctatcagtgtcactagctcaaccgaggtaaccacatctcaacagc 10269
Query: 325 caacaacgaagtctacaacgactttacaacctaccaccactgccgcaccaactacaattc 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10268 caacaacgaagtctacaacgactttacaacctaccaccactgccgcaccaactacaattc 10209
Query: 385 cagaaccatccagaacaactctacagcccagtacgactcaatcaagcgactcaactcaat 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10208 cagaaccatccagaacaactctacagcccagtacgactcaatcaagcgactcaactcaat 10149
Query: 445 ctactgactcctgggctgttacaagagctaaagaattaaacgaacaatttgtaaagggtg 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10148 ctactgactcctgggctgttacaagagctaaagaattaaacgaacaatttgtaaagggtg 10089
Query: 505 agttaaatggtaaggactcttgctcggatggcgaaatctcatgcactgctgatggtaaga 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10088 agttaaatggtaaggactcttgctcggatggcgaaatctcatgcactgctgatggtaaga 10029
Query: 565 ttgccatctgtaactacggagcatgggtttatacagaatgtgctgctggtacaacatgtt 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10028 ttgccatctgtaactacggagcatgggtttatacagaatgtgctgctggtacaacatgtt 9969
Query: 625 ttgcatatgactctggtgactccgtgtacacttcctgtaacttcacttattttgaaccag 684
|||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 9968 ttgcatatgactctggtgactccgtgtacacttcctgtaacttcacttatttgaaaccag 9909
Query: 685 acgtggttttctaatcagtggttacagaatgtccatcaacctcatacccaagcatgtttg 744
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9908 acgtggttttctaatcagtggttacagaatgtccatcaacctcatacccaagcatgtttg 9849
Query: 745 cattaggaattattattacatatatttccttcattttgatacagcctggtacatctgttt 804
|||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 9848 cattaggaattattattacatatatttccttcattttgatacagcctgttacatctgtta 9789
Query: 805 acgaaacttcatttccttcattaatacccagtgatcgaacaaaatgggttacttat 860
|||||||| |||||| | |||||||| |||||||||||||||||||| ||||||||
Sbjct: 9788 acgaaactccatttcttccattaataaccagtgatcgaacaaaatggtttacttat 9733
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5741
Number of Sequences: 1807
Number of extensions: 5741
Number of successful extensions: 27
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)