BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD03RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1786 1356 0.0
>3x_Contig1786
Length = 33838
Score = 1356 bits (684), Expect = 0.0
Identities = 732/744 (98%), Gaps = 3/744 (0%)
Strand = Plus / Minus
Query: 47 agtaatttggttgctaacccagacttggtcgatgctgctaaggacgctgatatccttgtc 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23599 agtaatttggttgctaacccagacttggtcgatgctgctaaggacgctgatatccttgtc 23540
Query: 107 tttaacattcctcatcaattcttgccaagaatctgttctcaactaaagggtaacgtgaag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23539 tttaacattcctcatcaattcttgccaagaatctgttctcaactaaagggtaacgtgaag 23480
Query: 167 cctcaggctcgtgctatctcttgtttgaagggtttcgacgtcggtaaggatggtgttaag 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23479 cctcaggctcgtgctatctcttgtttgaagggtttcgacgtcggtaaggatggtgttaag 23420
Query: 227 ctattgtctacttatatcaaggaaactttgaatatcgaatgtggtgctctatccggtgct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23419 ctattgtctacttatatcaaggaaactttgaatatcgaatgtggtgctctatccggtgct 23360
Query: 287 aacttggctccagaagtcgccaaggaaaattggtccgaaaccactgttgcataccaaatc 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23359 aacttggctccagaagtcgccaaggaaaattggtccgaaaccactgttgcataccaaatc 23300
Query: 347 ccagaagattacaagggtccaggtaaggatgttgaccattctttgttgaaagccttgttc 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23299 ccagaagattacaagggtccaggtaaggatgttgaccattctttgttgaaagccttgttc 23240
Query: 407 cacagaccttacttccacgtcaacgtcattgaagatgttgctggtatttcggtcgcgggt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23239 cacagaccttacttccacgtcaacgtcattgaagatgttgctggtatttcggtcgcgggt 23180
Query: 467 gctttgaagaacgttatcgccttaggttgtggttacgttgaaggtttgggctggggtaac 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23179 gctttgaagaacgttatcgccttaggttgtggttacgttgaaggtttgggctggggtaac 23120
Query: 527 aacgccagtgctgccattcaaagagtcggtctctctgaaatgatcaaatttggtcgtact 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23119 aacgccagtgctgccattcaaagagtcggtctctctgaaatgatcaaatttggtcgtact 23060
Query: 587 ttcttcccagaatgtaaggtcgaaacttacttccaagaatctgccggtgttgctgatttg 646
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23059 ttcttcccagaatgtaaggtcgaaacttacttccaagaatctgccggtgttgctgatttg 23000
Query: 647 atcaccacttgtgccggtggtagaaacgttagagttgcgaaacacatggccatcactggt 706
||||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 22999 atcaccacttgtgccggtggtagaaacgtaagagttgcgaaacacatggccatcactggt 22940
Query: 707 aaatttgctgaagaagcttaaaaagagcttttgaaacgttcaatccgttc-aggtattat 765
|| | ||||||||||||| |||| ||||| ||| |||| |||||||| || |||||||||
Sbjct: 22939 aagtctgctgaagaagctgaaaaggagctattg-aacggtcaatccgctcaaggtattat 22881
Query: 766 cacaacctaaagaagtccacgaat 789
||||| |||| |||||||||||||
Sbjct: 22880 cacaa-ctaaggaagtccacgaat 22858
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6480
Number of Sequences: 1807
Number of extensions: 6480
Number of successful extensions: 40
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)