BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD04FM1.SCF screened BAC_end
(942 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1730 1227 0.0
>3x_Contig1730
Length = 17223
Score = 1227 bits (619), Expect = 0.0
Identities = 712/737 (96%), Gaps = 5/737 (0%)
Strand = Plus / Plus
Query: 86 ttgtgctcgcgagaccctgaatacagagagaacattggttcttgcaacaacgtattcttc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1541 ttgtgctcgcgagaccctgaatacagagagaacattggttcttgcaacaacgtattcttc 1600
Query: 146 cctttccgctgacgtaaaattcccatgtaagcatttattaaccacagtgggttgcaatat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1601 cctttccgctgacgtaaaattcccatgtaagcatttattaaccacagtgggttgcaatat 1660
Query: 206 ctcgtcaaaaacgttcatttattatctatccccgatatttaaacgtttcagattcaggtg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1661 ctcgtcaaaaacgttcatttattatctatccccgatatttaaacgtttcagattcaggtg 1720
Query: 266 tgactgaagagtgctagtatgcccacctacgctcgtctgtttccagtgttcttagtaatg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1721 tgactgaagagtgctagtatgcccacctacgctcgtctgtttccagtgttcttagtaatg 1780
Query: 326 atagttacctatattttgaagaaccggtgaatatttaaaaattcacagaaactgaaagta 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1781 atagttacctatattttgaagaaccggtgaatatttaaaaattcacagaaactgaaagta 1840
Query: 386 aatgtttcgatgacatctgcagaccatttgaaaagatgaataactgcatctgcaaaacag 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1841 aatgtttcgatgacatctgcagaccatttgaaaagatgaataactgcatctgcaaaacag 1900
Query: 446 atataaacatagtgtactgtctgtgagcagcagctattagtcaatctggcctgaaatttc 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1901 atataaacatagtgtactgtctgtgagcagcagctattagtcaatctggcctgaaatttc 1960
Query: 506 tgtaaccaaaggtttctacggaccgcgagaagaagaacgttttccaacaagttcagatgg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1961 tgtaaccaaaggtttctacggaccgcgagaagaagaacgttttccaacaagttcagatgg 2020
Query: 566 taaagcagttcgtcatagtcataaaattgggatcttcatcactagttgatgaagagacca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2021 taaagcagttcgtcatagtcataaaattgggatcttcatcactagttgatgaagagacca 2080
Query: 626 aaggaccanaactttctatcatgtcattgattgtggagactgtggtaaag-tacccagaa 684
||| |||| ||||||||||||||||||||||||||||||||||||||||| ||| |||||
Sbjct: 2081 aagaaccaaaactttctatcatgtcattgattgtggagactgtggtaaagttacgcagaa 2140
Query: 685 ga-gacacanagttatcattgtatctagtggaggtattcgccgtcggattgaaaactaat 743
|| |||||| |||||||||||||||||||||||||| ||||||||||||||||||| ||
Sbjct: 2141 gaggacacaaagttatcattgtatctagtggaggta-tcgccgtcggattgaaaac-gat 2198
Query: 744 aattataaaggggaagcccaaaaaactttccagggggccagcaattgcagttgtggggcc 803
| ||| ||||| | ||| || ||||| |||| || || |||||| |||| ||| |||||
Sbjct: 2199 gaatatgaagggaaggccaaagaaactatccaaggtgcaagcaatcgcagctgt-gggcc 2257
Query: 804 aaggcaaaataattggg 820
|||||| | ||||||||
Sbjct: 2258 aaggcagattaattggg 2274
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6691
Number of Sequences: 1807
Number of extensions: 6691
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 942
length of database: 10,358,551
effective HSP length: 16
effective length of query: 926
effective length of database: 10,329,639
effective search space: 9565245714
effective search space used: 9565245714
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)