BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD04RM1.SCF screened BAC_end
(935 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1705 1314 0.0
>3x_Contig1705
Length = 16734
Score = 1314 bits (663), Expect = 0.0
Identities = 709/723 (98%), Gaps = 1/723 (0%)
Strand = Plus / Plus
Query: 48 taggtcaaaatgatagaggttatccaatactgatatttctacgaaattattatatgccct 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4235 taggtcaaaatgatagaggttatccaatactgatatttctacgaaattattatatgccct 4294
Query: 108 tacttatgttttgttagttttgaagaatccgtcaattcttcctttacccttagcaacctt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4295 tacttatgttttgttagttttgaagaatccgtcaattcttcctttacccttagcaacctt 4354
Query: 168 tggtttcacaactttagccttttgaataggttgtttctttacggtttttgtgccatttgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4355 tggtttcacaactttagccttttgaataggttgtttctttacggtttttgtgccatttgg 4414
Query: 228 aatggctgtagacatagcagctttgataaggagctctctttccctttctgtttgtaatgt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4415 aatggctgtagacatagcagctttgataaggagctctctttccctttctgtttgtaatgt 4474
Query: 288 ttcgttcttgtacttgtcgtatgagtcgaaacattgtttgatgttaagatttgaagattc 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4475 ttcgttcttgtacttgtcgtatgagtcgaaacattgtttgatgttaagatttgaagattc 4534
Query: 348 atgtctaattagatcctggtatgcgagttgtgggatcaaggaaactagaagattacacga 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4535 atgtctaattagatcctggtatgcgagttgtgggatcaaggaaactagaagattacacga 4594
Query: 408 cattatgcatttcagagatgatgctatatcttcaggtagcgattttggtattttaagaga 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4595 cattatgcatttcagagatgatgctatatcttcaggtagcgattttggtattttaagaga 4654
Query: 468 agtaggggaagttgttgttgattttgatgactttcttcagtagccattctactatcattt 527
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4655 agta-gggaagttgttgttgattttgatgactttcttcagtagccattctactatcattt 4713
Query: 528 gaggttcgatacgataatacttgtcaccagcttcttccactgtatgtgatattttcccga 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4714 gaggttcgatacgataatacttgtcaccagcttcttccactgtatgtgatattttcccga 4773
Query: 588 gacaactttcccatatttttggaggtatcttctcccaattttcactgtgattattcgtta 647
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 4774 gacaactttcccataattttggaggtatcttctcccaattttcactgtgattattcgtta 4833
Query: 648 atttctcttggtaatcagaactagtattaaagttagtatccatattgagtgcgggtggaa 707
||||||||||||||||||||||||||| ||||||||||||||||| ||||||||||||||
Sbjct: 4834 atttctcttggtaatcagaactagtataaaagttagtatccatatcgagtgcgggtggaa 4893
Query: 708 cgcaaggtgttattaacgcttaatccttactaataattttgttggtcccattataatacc 767
|||||||||| || |||||| ||||| |||| ||| ||||||| ||| || ||||||||
Sbjct: 4894 cgcaaggtgtaataaacgctagatcctcactagtaactttgttgttcctataataatacc 4953
Query: 768 cac 770
|||
Sbjct: 4954 cac 4956
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7499
Number of Sequences: 1807
Number of extensions: 7499
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 935
length of database: 10,358,551
effective HSP length: 16
effective length of query: 919
effective length of database: 10,329,639
effective search space: 9492938241
effective search space used: 9492938241
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)