BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD05FM1.SCF screened BAC_end
(914 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig298 724 0.0
3x_Contig29 630 e-180
>3x_Contig298
Length = 1562
Score = 724 bits (365), Expect = 0.0
Identities = 530/576 (92%), Gaps = 8/576 (1%)
Strand = Plus / Minus
Query: 309 aattgtcatatcatgatcttcgatgaacaagtactgtgatacaaaggtacctccatttat 368
|||||| |||| ||||| || |||||| || || ||||||| ||||||| | ||||||
Sbjct: 1284 aattgtgatatgatgatgttggatgaagaaatagtgtgatagaaaggtaggtggatttat 1225
Query: 369 caacctgatcaagtaggttttatctgtatcgaaatgaatggtattattagttgtatggtt 428
|| |||| ||||||||||||| ||||| ||||||||||||||||||||||||||||||
Sbjct: 1224 gaaggtgatgaagtaggttttatgtgtatggaaatgaatggtattattagttgtatggtt 1165
Query: 429 gaacaatatatttctagggatcggttcggcaccagttggattgtactgacttagaaagaa 488
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1164 gaagaatatatttctagggatcggttcggcaccagttggattgtactgacttagaaagaa 1105
Query: 489 atctgcaacttcgtaatatggtttatcataaagatcggaaactaaaatggtcatctcttc 548
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1104 atctgcaacttcgtaatatggtttatcataaagatcggaaactaaaatggtcatctcttc 1045
Query: 549 gtcataatcaaatggcatgtctggatcatgaatgacaaatgcacctctcataccgtctgt 608
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1044 gtcataatcaaatggcatgtctggatcatgaatgacaaatgcacctctcataccgtctgt 985
Query: 609 gtattgagctcccgaatgggaatgataccaataggtgcctacctggtctggcacggtgaa 668
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 984 gtattgagctcccgaatgggaatgataccaataggtgcctacctggtctggcacggtgaa 925
Query: 669 attgtaccaaaacgtatcacctggnctggattggacactgtgttaccatcttctggaccg 728
||||||| |||||||||||||||| |||||||||||||||||| |||||| |||||||||
Sbjct: 924 attgtacaaaaacgtatcacctgg-ctggattggacactgtgtaaccatc-tctggaccg 867
Query: 729 tcccttttgatttgaattcccaagttcagtatttcttgaaaggaccttggaaatgttaag 788
| || |||||||||||||||||||||||||| ||| ||||| |||| ||||||||| |||
Sbjct: 866 t-ccatttgatttgaattcccaagttcagta-ttcatgaaaagaccatggaaatgtaaag 809
Query: 789 gagtggggccaaatcgtcaaaaccatttatccaattaatctcaatttcat-ccccttgtt 847
|||||| |||||||||||||||||| || ||| |||||||||| || |||||||||
Sbjct: 808 aagtggg--caaatcgtcaaaaccattagtcaaataaatctcaattcgatcccccttgtt 751
Query: 848 aaccggtttttttggaattggccag-gaccgttaaa 882
||| || | | ||||||||||||| ||||||||||
Sbjct: 750 aacgtgtatatctggaattggccagtgaccgttaaa 715
>3x_Contig29
Length = 885
Score = 630 bits (318), Expect = e-180
Identities = 334/338 (98%), Gaps = 1/338 (0%)
Strand = Plus / Minus
Query: 87 cttagcttctccgttctttgagctgtatgaaatagtattcgtcctattcaattctaagtc 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 364 cttagcttctccgttctttgagctgtatgaaatagtattcgtcctattcaattctaagtc 305
Query: 147 agctgggatcacatctaacatttcatcatccattatttgcatgaaagcgaagttcttaga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 304 agctgggatcacatctaacatttcatcatccattatttgcatgaaagcgaagttcttaga 245
Query: 207 cttagtatgcttcgatttaaccaatatgctcattctttgacctgcagcaatgtataacaa 266
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 244 cttagtatgcttcgagttaaccaatatgctcattctttgacctgcagcaatgtataacaa 185
Query: 267 ttttgccttcgttggatcaacgtaaacaccatcaacttccacaattgtcatatcatgatc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 184 ttttgccttcgttggatcaacgtaaacaccatcaacttccacaattgtcatatcatgatc 125
Query: 327 ttcgatgaacaagtactgtgatacaaaggtacctccatttatcaa-cctgatcaagtagg 385
||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 124 ttcgatgaacaagtactgtgatacaaaggtacctccatttatcaagcctgatcaagtagg 65
Query: 386 ttttatctgtatcgaaatgaatggtattattagttgta 423
|||||||||||||||||||||||||| ||||||||||
Sbjct: 64 ttttatctgtatcgaaatgaatggtaaaattagttgta 27
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7020
Number of Sequences: 1807
Number of extensions: 7020
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 2
length of query: 914
length of database: 10,358,551
effective HSP length: 16
effective length of query: 898
effective length of database: 10,329,639
effective search space: 9276015822
effective search space used: 9276015822
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)