BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD05RM1.SCF screened BAC_end
(907 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1334 1431 0.0
>3x_Contig1334
Length = 7302
Score = 1431 bits (722), Expect = 0.0
Identities = 809/826 (97%), Gaps = 9/826 (1%)
Strand = Plus / Minus
Query: 53 acaatgtgagatggttgatccaaatcccaagattatatgatgtttataagaaaacgggaa 112
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1696 acaatgtgagatggttgatccaaatcccaagattatatgatgtttataagaaaacgggaa 1637
Query: 113 ttgtcgagaacttttttgatatctgtaaaagcatttttttgccattatttgaggtaacac 172
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1636 ttgtcgagaacttttttgatatctgtaaaagcatttttttgccattatttgaggtaacac 1577
Query: 173 aaaatccacaatcccaccctaagctacacattttcctacaacgcgttgtaggttttgata 232
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1576 aaaatccacaatcccaccctaagctacacattttcctacaacgcgttgtaggttttgata 1517
Query: 233 gtgttgatgatgaatctaaagtggataggcgcttccagaaaaaatatccaaaaccaactc 292
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1516 gtgttgatgatgaatctaaagtggataggcgcttccagaaaaaatatccaaaaccaactc 1457
Query: 293 tttgggattcaactcaaaatccaccatattcgtaccaactatactacttgtacgcgaaca 352
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1456 tttgggattcaactcaaaatccaccatattcgtaccaactatactacttgtacgcgaaca 1397
Query: 353 ttgcatctttgaactggtggagagcaaagcgtggtttcaatacgttagtcttaagaccac 412
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1396 ttgcatctttgaactggtggagagcaaagcgtggtttcaatacgttagtcttaagaccac 1337
Query: 413 attgtggtgaggcaggagatcctgaacatttaatttcagcttacttgttagctcaaggaa 472
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1336 attgtggtgaggcaggagatcctgaacatttaatttcagcttacttgttagctcaaggaa 1277
Query: 473 ttaatcatggtatactcttgagaaagattccattcgtacaatatttattctatttggatc 532
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1276 ttaatcatggtatactcttgagaaagattccattcgtacaatatttattctatttggatc 1217
Query: 533 aaattgggattgctatgtccccattatcaaataacgcgttgttcttgacgtacgataaga 592
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1216 aaattgggattgctatgtccccattatcaaataacgcgttgttcttgacgtacgataaga 1157
Query: 593 acccattccaatactatttcaaaagaggtctcaatgtttcgctttcaactgatgatccat 652
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1156 acccattccaatactatttcaaaagaggtctcaatgtttcgctttcaactgatgatccat 1097
Query: 653 tgcaattttcttacactagagaacctttaatttgagagtattctgttgctgcac-aatat 711
|||||||||||||||||||||||||||||||| |||||||||||||||||||| |||||
Sbjct: 1096 tgcaattttcttacactagagaacctttaattgaagagtattctgttgctgcacaaatat 1037
Query: 712 acaaattgtcc-acgttgatatgtgtgaacttgcc-aaaactctgttatgcagagtggtt 769
||||||||||| ||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 1036 acaaattgtccaacgttgatatgtgtgaacttgccaaaaactctgttatgcagagtggtt 977
Query: 770 gggaagctcatattaaaa-gcactggatcggtaaacac-ttgtaaaagaaggtttcgaa- 826
|||||||||| ||||||| ||||||||||||||||||| ||| |||||||||| |||||
Sbjct: 976 gggaagctcaaattaaaaggcactggatcggtaaacactttgaaaaagaaggtatcgaag 917
Query: 827 ggaatgat-ttttgaaaaccaatgtttccagat-taagagtcaatt 870
|||||||| || |||||||||| |||||||| ||||||||||||
Sbjct: 916 ggaatgatcttgaaaaaaccaatg-ttccagatataagagtcaatt 872
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7110
Number of Sequences: 1807
Number of extensions: 7110
Number of successful extensions: 50
Number of sequences better than 1.0e-20: 1
length of query: 907
length of database: 10,358,551
effective HSP length: 16
effective length of query: 891
effective length of database: 10,329,639
effective search space: 9203708349
effective search space used: 9203708349
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)