BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD06FM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1802 1132 0.0
>3x_Contig1802
Length = 45229
Score = 1132 bits (571), Expect = 0.0
Identities = 652/670 (97%), Gaps = 7/670 (1%)
Strand = Plus / Minus
Query: 85 aattggaaacctttgtataccgatattgaaattgctttgttgcttcaatattgtatatgc 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11713 aattggaaacctttgtataccgatattgaaattgctttgttgcttcaatattgtatatgc 11654
Query: 145 tttccaatgatcaatcttttcaattttttgatacttcgcatcacagtttcgaaaaatttt 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11653 tttccaatgatcaatcttttcaattttttgatacttcgcatcacagtttcgaaaaatttt 11594
Query: 205 tagatctgctcgttaagagtgatgtactacacgtgacctaactattataattaagtttca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11593 tagatctgctcgttaagagtgatgtactacacgtgacctaactattataattaagtttca 11534
Query: 265 ttacttactactaatggccctcaggtattaagctgcagagatactaactaccagtaaccc 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11533 ttacttactactaatggccctcaggtattaagctgcagagatactaactaccagtaaccc 11474
Query: 325 atactagatgcgatcgtgctaagaagcgccagaagattgattttttagcctcgttttgat 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11473 atactagatgcgatcgtgctaagaagcgccagaagattgattttttagcctcgttttgat 11414
Query: 385 tgttttgatgtgtgcgaatctgcgagaccatgtagaacagtgttctgacgatacggactc 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11413 tgttttgatgtgtgcgaatctgcgagaccatgtagaacagtgttctgacgatacggactc 11354
Query: 445 gtgccaaatttgtgcgaatgtgtttgcgacagtacataaatgcctgacatacgctgcgag 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11353 gtgccaaatttgtgcgaatgtgtttgcgacagtacataaatgcctgacatacgctgcgag 11294
Query: 505 gcgctgcctatgcatgattttgaagtgggatgtagagaatataccaggaacttcttttgc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11293 gcgctgcctatgcatgattttgaagtgggatgtagagaatataccaggaacttcttttgc 11234
Query: 565 tctgntaatctttaccttatagaattcactcacagagtctttttcatctttgccgttccc 624
|||| |||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11233 tctgtaaatcttcaccttatagaattcactcacagagtctttttcatctttgccgttcca 11174
Query: 625 atttggtttgatgacaaggtttattgaaatgaattgactttttgattatgtcaaaccggg 684
|||||||||||||||||||||| || ||||||||| |||||||||||||||| ||||
Sbjct: 11173 cattggtttgatgacaaggtttatgaaattgaattgac-ttttgattatgtcaaa-cggg 11116
Query: 685 aacgagtccttgttttcgtttcatcggaatattttgttgattaaagttattaccaaacgt 744
||||||||| |||||||| ||||||| |||| | |||||| ||||||||||||| |||||
Sbjct: 11115 aacgagtcc-tgttttcg-ttcatcgtaata-tatgttga-taaagttattacc-aacgt 11061
Query: 745 gtcttttttt 754
||||||||||
Sbjct: 11060 gtcttttttt 11051
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9170
Number of Sequences: 1807
Number of extensions: 9170
Number of successful extensions: 68
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)