BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD06RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1313 1326 0.0
>3x_Contig1313
Length = 8010
Score = 1326 bits (669), Expect = 0.0
Identities = 744/760 (97%), Gaps = 7/760 (0%)
Strand = Plus / Minus
Query: 50 gcttaactctagcgacctgtcgctcgccccacagaacctcacccgagaaccacacattac 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7127 gcttaactctagcgacctgtcgctcgccccacagaacctcacccgagaaccacacattac 7068
Query: 110 acgccgccagctcccactatactcatcttgcttcccttaagcgttctcacgattcgttcg 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7067 acgccgccagctcccactatactcatcttgcttcccttaagcgttctcacgattcgttcg 7008
Query: 170 ctgcccttcttcaagagtcttctgattctaattctcattcgaaatcctctactgttaatg 229
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 7007 ctgcccttcttcaagagtcttctgattctaattctcattcgaaatcctctacagttaatg 6948
Query: 230 aattgcttgacatgacattcattgtctcatggttttggctttttggcttttgtcttttaa 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6947 aattgcttgacatgacattcattgtctcatggttttggctttttggcttttgtcttttaa 6888
Query: 290 agctatatcaactttacatataaatatacgtcaaaaggggattcattaattagaaaattc 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6887 agctatatcaactttacatataaatatacgtcaaaaggggattcattaattagaaaattc 6828
Query: 350 tctttttcaatagttgctattcattatcaatctattcaactcaattggttattattttca 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6827 tctttttcaatagttgctattcattatcaatctattcaactcaattggttattattttca 6768
Query: 410 tctttttgtcatcctaaaccatcaacaatatttaaatatatctgttgctacattaagagt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6767 tctttttgtcatcctaaaccatcaacaatatttaaatatatctgttgctacattaagagt 6708
Query: 470 tacttcagaaataacaaaaaaatcgatcaagaattaataaaaatgtctttgagttcaaaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6707 tacttcagaaataacaaaaaaatcgatcaagaattaataaaaatgtctttgagttcaaaa 6648
Query: 530 ttgactgtcaaggatttggatgtcactggtaaaagagtgttcatcagagttgatttcaac 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6647 ttgactgtcaaggatttggatgtcactggtaaaagagtgttcatcagagttgatttcaac 6588
Query: 590 gtcccattggacggtaagaagatcacttnc-accaaagaattgtagcagctctgcctact 648
|||||||||||||||||||||||||||| | |||||||||||||||||||||||||||||
Sbjct: 6587 gtcccattggacggtaagaagatcacttccaaccaaagaattgtagcagctctgcctact 6528
Query: 649 atttcattacgtttgggaaaag-agccaaaggccatttgtcttggcctctcatttgggta 707
| |||| ||||||| ||||||| |||||||||||| ||||||||||||||||||||||||
Sbjct: 6527 a-ttcaatacgttttggaaaagaagccaaaggcca-ttgtcttggcctctcatttgggta 6470
Query: 708 gaccaaacgggggaatttaacgacaaatcctctttggctccagttgccgatagaattgtc 767
|||||||| || ||| |||||||||||| ||| |||||||||||||||||| ||||||||
Sbjct: 6469 gaccaaac-ggtgaagttaacgacaaatactcattggctccagttgccgat-gaattgtc 6412
Query: 768 tagactattgcaaaagccagttacctttcttgcttgactg 807
||||||||||||||||||||||| ||||||||| ||||||
Sbjct: 6411 tagactattgcaaaagccagtta-ctttcttgcatgactg 6373
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8527
Number of Sequences: 1807
Number of extensions: 8527
Number of successful extensions: 59
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)