BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD07FM1.SCF screened BAC_end
(947 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1275 0.0
>3x_Contig1774
Length = 27771
Score = 1275 bits (643), Expect = 0.0
Identities = 679/687 (98%), Gaps = 3/687 (0%)
Strand = Plus / Minus
Query: 88 ttcgtaaaaccttttggctaaatggaaatctttttctacaccaagaccgtattcgtacat 147
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13868 ttcgtaaaaccttttggctaaatggaaatctttttctacaccaagaccgtattcgtacat 13809
Query: 148 gtaccctaggttccataagcattgaacattattacaggtttcgtattcttttaccgcctt 207
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13808 gtaccctaggttccataagcattgaacattattacaggtttcgtattcttttaccgcctt 13749
Query: 208 ttcgtactcgcccatattatagaatatgtcgccagccaccaccttcgcatcagaatattg 267
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13748 ttcgtactcgcccatattatagaatatgtcgccagccaccaccttcgcatcagaatattg 13689
Query: 268 cccccgaattcctcgctgtccaagtgaagataacaggtaataatgcaatgccatatccct 327
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13688 cccccgaattcctcgctgtccaagtgaagataacaggtaataatgcaatgccatatccct 13629
Query: 328 cctagcttctgggatgatgggtggtttttcgaaaagtctcggtggctgatagagaagcca 387
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13628 cctagcttctgggatgatgggtggtttttcgaaaagtctcggtggctgatagagaagcca 13569
Query: 388 tgctgcagatacctgtgcttcatgatagccttgctcggcagccatagcgtaataccatag 447
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13568 tgctgcagatacctgtgcttcatgatagccttgctcggcagccatagcgtaataccatag 13509
Query: 448 ggcaacctcgctttcctgacgtagtaaagccaaaaaagcatctttcaagtaatacgccaa 507
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13508 ggcaacctcgctttcctgacgtagtaaagccaaaaaagcatctttcaagtaatacgccaa 13449
Query: 508 gtgttgttcattctcattaacaaagtatcggtagaagttagtgttatcattgctattgaa 567
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13448 gtgttgttcattctcattaacaaagtatcggtagaagttagtgttatcattgctattgaa 13389
Query: 568 tctagtgggattctgttctgtcaatcttgccaactcatatgctgcaggaaagtactcaaa 627
|||||||| |||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13388 tctagtggaattctgttctgtcaatcttgccaactcatatgctgcaggaaagtactcaaa 13329
Query: 628 acaaatgtgctgtaggtaaagtatctggcatgacactttgggttattgggtgcttttcgt 687
|||||||||||||||||||||||||||||||||||| ||||||||||| |||||||||||
Sbjct: 13328 acaaatgtgctgtaggtaaagtatctggcatgacac-ttgggttattgtgtgcttttcgt 13270
Query: 688 tagctgccagtttggaacatttgaaaccttgctaccatcccttctgatgaggggaaggtt 747
||||||||||||||| |||||||||||||||||| ||||||||||||||| |||| |||
Sbjct: 13269 tagctgccagtttgg-acatttgaaaccttgctaacatcccttctgatga-gggagtgtt 13212
Query: 748 attatagaaattccaagccttttcctt 774
|||||||||||||||||||||||||||
Sbjct: 13211 attatagaaattccaagccttttcctt 13185
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6187
Number of Sequences: 1807
Number of extensions: 6187
Number of successful extensions: 55
Number of sequences better than 1.0e-20: 1
length of query: 947
length of database: 10,358,551
effective HSP length: 16
effective length of query: 931
effective length of database: 10,329,639
effective search space: 9616893909
effective search space used: 9616893909
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)