BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD08FM1.SCF screened BAC_end
(954 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1807 1193 0.0
>3x_Contig1807
Length = 66587
Score = 1193 bits (602), Expect = 0.0
Identities = 662/677 (97%), Gaps = 4/677 (0%)
Strand = Plus / Plus
Query: 86 tgcgtgccgtgctgtattgctcgacccgcagtcccgaagatctaagacgtttttcctatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7564 tgcgtgccgtgctgtattgctcgacccgcagtcccgaagatctaagacgtttttcctatc 7623
Query: 146 tctttgtgatgaggagaaaagcaacacggtacctaccaagagctgctaagaacattgaag 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7624 tctttgtgatgaggagaaaagcaacacggtacctaccaagagctgctaagaacattgaag 7683
Query: 206 tgtggtggtgccttgtctagaacaattgtttggtcaaatctaaatatttgcagaaattgg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7684 tgtggtggtgccttgtctagaacaattgtttggtcaaatctaaatatttgcagaaattgg 7743
Query: 266 ttgactacattgagaaggagctggaaactattgcctctttcgagtcttatgacgacggtg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7744 ttgactacattgagaaggagctggaaactattgcctctttcgagtcttatgacgacggtg 7803
Query: 326 acgaaatacctcctaccataggcgatgtgcagcttatcgtgaactacctcaggttagctg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7804 acgaaatacctcctaccataggcgatgtgcagcttatcgtgaactacctcaggttagctg 7863
Query: 386 ctggagttgttgtgtgtataatttgaggctctactattaaatgtgtcaaaatttcgcaca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7864 ctggagttgttgtgtgtataatttgaggctctactattaaatgtgtcaaaatttcgcaca 7923
Query: 446 tattacaatcacgtgattggttcagttatgcattttgtttcgtctcgaaatcggatctaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7924 tattacaatcacgtgattggttcagttatgcattttgtttcgtctcgaaatcggatctaa 7983
Query: 506 ctttttcccttcgaaacctgaagtattttttgtagtttctagagctaattttattgataa 565
||||||||||||||||||||||||| ||||||||||||||||||||||||| ||||||||
Sbjct: 7984 ctttttcccttcgaaacctgaagta-tttttgtagtttctagagctaatttaattgataa 8042
Query: 566 ctccaaaggtatgacacttaggcaagattaactaggctaaaatttgttcagccagtaggc 625
|||||| |||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8043 ctccaagggtatgacacttaggcaagattaactaggctaaaatttgttcagccagtaggc 8102
Query: 626 aaatcaaactgttcaagctgtgcgctcatttttactttgaaattggttgagaaagagctt 685
|||||||||||||||||||||||||||| ||||||||||||||||||||||||||||||
Sbjct: 8103 aaatcaaactgttcaagctgtgcgctcaattttactttgaaattggttgagaaagagctc 8162
Query: 686 atgtggccaccaatgtctntgagacaattattttaatttgaaagggtgataaactttttg 745
||||||| ||||||| || ||||||||||| ||||||| |||||| ||| | || |||||
Sbjct: 8163 atgtggcaaccaatg-ctttgagacaatta-tttaattcgaaaggctgagagacattttg 8220
Query: 746 tcttttggaaagcgccc 762
|| ||||||||||||||
Sbjct: 8221 tc-tttggaaagcgccc 8236
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6087
Number of Sequences: 1807
Number of extensions: 6087
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 954
length of database: 10,358,551
effective HSP length: 16
effective length of query: 938
effective length of database: 10,329,639
effective search space: 9689201382
effective search space used: 9689201382
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)