BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD09RM1.SCF screened BAC_end
(923 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1469 0.0
>3x_Contig1654
Length = 17174
Score = 1469 bits (741), Expect = 0.0
Identities = 799/813 (98%), Gaps = 4/813 (0%)
Strand = Plus / Minus
Query: 50 aattttgccctaggctgctaacagtatcgtcactaataaacttgtcatttcaagaagcaa 109
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2766 aattttgccctaggctgctaacagtatcgtcactaataaacttgtcatttcaagaagcaa 2707
Query: 110 ttttgctggccaggaccgaattttttctttctctttccttgaatataattgaatgagttt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2706 ttttgctggccaggaccgaattttttctttctctttccttgaatataattgaatgagttt 2647
Query: 170 tagatcaatatttcgccagatgtcgtcggtagcagcgaacagaagcatagatggtcccat 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2646 tagatcaatatttcgccagatgtcgtcggtagcagcgaacagaagcatagatggtcccat 2587
Query: 230 tgctcagaggatcaccaaaaaagtgaaagatactttcccagatctttcacattttgctat 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2586 tgctcagaggatcaccaaaaaagtgaaagatactttcccagatctttcacattttgctat 2527
Query: 290 tttcaatgactcatacaagcatagcggtcatcatgggattcaagatgctgcgaacaagat 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2526 tttcaatgactcatacaagcatagcggtcatcatgggattcaagatgctgcgaacaagat 2467
Query: 350 tgaatcacacttcagactagagatagtgagcggattgttcaaagggaaaagccttcccat 409
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 tgaatcacacttcagactagagatagtgagcggattgttcaaagggaaaagccttcccat 2407
Query: 410 gagacaccgaatggtatatgggatgctaaatgaggaatttgatgatggggtacatgcttt 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406 gagacaccgaatggtatatgggatgctaaatgaggaatttgatgatggggtacatgcttt 2347
Query: 470 acagctaacgacaaaaactccggaggagtatgccaagaagcatgctgaaaattgacgtac 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2346 acagctaacgacaaaaactccggaggagtatgccaagaagcatgctgaaaattgacgtac 2287
Query: 530 gttaaaatcaacctgaaccgataaaatagtttaaaaacttgatacttaagtgtatacata 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2286 gttaaaatcaacctgaaccgataaaatagtttaaaaacttgatacttaagtgtatacata 2227
Query: 590 tatcgtgataccaacgcacacatataaacacgccgcattaaacatgtagctggatattat 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2226 tatcgtgataccaacgcacacatataaacacgccgcattaaacatgtagctggatattat 2167
Query: 650 tgaatcaatggtcttcctttagatgagcttcgtactgctctagcgataacaattcatcgg 709
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2166 tgaatcaatggtcttcctttagatgagcttcgtactgctctagcgataacaattcatcgg 2107
Query: 710 attggtaatctgcctcatcgttaaatttaatcttgatgatccaaccttcaccangctggg 769
|||| |||||||||||||||||| |||||||||||||||||||||||||||| ||||||
Sbjct: 2106 attgtaaatctgcctcatcgttaattttaatcttgatgatccaaccttcacca-gctggg 2048
Query: 770 tcgcttgttgatcatttgtggcgaggtcagac-aagctttgttcacttccacgacaggtc 828
|||| ||||||||| ||||||||| ||||||| |||||| ||||||||||||||||| |
Sbjct: 2047 tcgc-tgttgatcaattgtggcga-gtcagacaaagcttcgttcacttccacgacagtac 1990
Query: 829 cagcgacaggagaattattttcagatgcagact 861
||||||||||||| | | |||||||||||||||
Sbjct: 1989 cagcgacaggagagtaaatttcagatgcagact 1957
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6745
Number of Sequences: 1807
Number of extensions: 6745
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 923
length of database: 10,358,551
effective HSP length: 16
effective length of query: 907
effective length of database: 10,329,639
effective search space: 9368982573
effective search space used: 9368982573
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)