BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD12FM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1616 1201 0.0
>3x_Contig1616
Length = 10468
Score = 1201 bits (606), Expect = 0.0
Identities = 732/761 (96%), Gaps = 10/761 (1%)
Strand = Plus / Plus
Query: 86 cagctaaaagaatagttcagccagtgaactaggctgttcttggagctgggttgtgatatc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3278 cagctaaaagaatagttcagccagtgaactaggctgttcttggagctgggttgtgatatc 3337
Query: 146 catcaaatatgttttagtaaataggtactttgataattgcttagctttagaaagtgaaat 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3338 catcaaatatgttttagtaaataggtactttgataattgcttagctttagaaagtgaaat 3397
Query: 206 attgaagtcaaactccgttatctcctttgtttcgaatgctctccacttttcaccttcagg 265
||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3398 attgaagtcaaacaccgttatctcctttgtttcgaatgctctccacttttcaccttcagg 3457
Query: 266 agtaagaacgagacaagtttatcatcatcttcccattagaataacctatttttattggcg 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3458 agtaagaacgagacaagtttatcatcatcttcccattagaataacctatttttattggcg 3517
Query: 326 aactccttaagtaacagcgtgttctagacaatgtcactagatgttcagcagatggacgtt 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3518 aactccttaagtaacagcgtgttctagacaatgtcactagatgttcagcagatggacgtt 3577
Query: 386 taggatgactgtttcatgatcggcctattcgtttgtaagtgctttatttttcgtgcgtca 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3578 taggatgactgtttcatgatcggcctattcgtttgtaagtgctttatttttcgtgcgtca 3637
Query: 446 tttcaatactatatattccaaaaaggcgcaattaagcgctatcctaattgacaaccaaga 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3638 tttcaatactatatattccaaaaaggcgcaattaagcgctatcctaattgacaaccaaga 3697
Query: 506 agatcacgaaatgtttctgcagtgatatatactttcattgaagctagaagtagaataaga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3698 agatcacgaaatgtttctgcagtgatatatactttcattgaagctagaagtagaataaga 3757
Query: 566 ctcattcttaatgccgatgtctgatttcatttttgaaatgagtgtaaaactatggcttac 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3758 ctcattcttaatgccgatgtctgatttcatttttgaaatgagtgtaaaactatggcttac 3817
Query: 626 tgaagttcataggcttgtttagaagttaaa-gccccanattactttacgtactttcaaaa 684
|||||||||||||||||||||||||||||| |||||| | ||||| ||||| |||||||
Sbjct: 3818 tgaagttcataggcttgtttagaagttaaaggccccagaatacttaccgtaccttcaaaa 3877
Query: 685 tggcttttacaaaagagctgggttataatttat-aacttaaaggcggttgggactcttga 743
|||| | |||||||||||| |||||| | |||| |||||||| ||||||| |||||||||
Sbjct: 3878 tggcatctacaaaagagct-ggttattagttataaacttaaa-gcggttgtgactcttga 3935
Query: 744 gtaggaaacgcc-tattgggtcacgtgattttatttttaataatggacattttcaccttg 802
||| |||||||| |||| ||||||||||| ||| |||||||||| |||| ||||| | ||
Sbjct: 3936 gta-gaaacgccatatt-ggtcacgtgatatta-ttttaataat-gacaatttcaacctg 3991
Query: 803 tttaacatgttaagccaaattttaacctctaattaaagaat 843
| |||||||||||| |||| ||||| ||| |||||||||||
Sbjct: 3992 tataacatgttaag-caaaatttaaactcaaattaaagaat 4031
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7500
Number of Sequences: 1807
Number of extensions: 7500
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)