BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZD12RM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1479 1291 0.0
>3x_Contig1479
Length = 7316
Score = 1291 bits (651), Expect = 0.0
Identities = 740/763 (96%), Gaps = 5/763 (0%)
Strand = Plus / Minus
Query: 47 gcttatagaacgttagcttggttgaatccgtggtgatcttatttctgtagtaggtcaatt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3074 gcttatagaacgttagcttggttgaatccgtggtgatcttatttctgtagtaggtcaatt 3015
Query: 107 tcgataattcagcttcattatccttgatgccgcctggagagatcttacccttcaattcag 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3014 tcgataattcagcttcattatccttgatgccgcctggagagatcttacccttcaattcag 2955
Query: 167 gcaacttttcgttcaaaatacgtaggatcttttcgaagttgaacttacctttttcgtatt 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2954 gcaacttttcgttcaaaatacgtaggatcttttcgaagttgaacttacctttttcgtatt 2895
Query: 227 cctcaattccatatccagtgtcactgaccgggaatagtctttgaccattgaattctttct 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2894 cctcaattccatatccagtgtcactgaccgggaatagtctttgaccattgaattctttct 2835
Query: 287 tacccaatggcaagacatgtaacttggcgacatcacggacatcacaagcaacaccagctg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2834 tacccaatggcaagacatgtaacttggcgacatcacggacatcacaagcaacaccagctg 2775
Query: 347 gctggttaaatgggccttcatattctggagttgtcttcaaggccttgttgacgaagtcag 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2774 gctggttaaatgggccttcatattctggagttgtcttcaaggccttgttgacgaagtcag 2715
Query: 407 cagaggtgtttaaggaagccctagctaaaccgaaagtgaatttttgtggaccgaaaacgt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2714 cagaggtgtttaaggaagccctagctaaaccgaaagtgaatttttgtggaccgaaaacgt 2655
Query: 467 atggagggttcactgtagtcaaattgaatgtagaattgttgtccttcacgaaatcccagg 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2654 atggagggttcactgtagtcaaattgaatgtagaattgttgtccttcacgaaatcccagg 2595
Query: 527 ccaacttttcggcatatttctttagagcgacatatgaagtagcggcatcttcacgagcgt 586
|||||||||||||||||||||| ||| |||||||||||||||||||||||||||||||
Sbjct: 2594 ccaacttttcggcatatttcttagaagcaacatatgaagtagcggcatcttcacgagcgt 2535
Query: 587 ctttccaaatgaccgggttccaagtagtttcatcattgatgaaagttgggtcaccagagc 646
||| ||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2534 cttcccaaatgaccgggttccaagtagtttcatcattgatgaaagttgggtcaccagagc 2475
Query: 647 ggtgtctgtggacaatggctgcaaagggaagagtaactactacatgtttcgacgttctta 706
|||||||||| |||||||||||||||| | ||||||||||||||| |||||||||||||
Sbjct: 2474 ggtgtctgtgtacaatggctgcaaaggaagaagtaactactacatg-ttcgacgttctta 2416
Query: 707 ccgtatttttgaatagacctcaggacagacttggtaccttgaatggccggaattaaagta 766
|||||||||||||||||| ||||||||||||||||| ||| ||||||||| | |||||
Sbjct: 2415 ccgtatttttgaatagactcaaggacagacttggtaccgtgagtggccggaa-tcaagta 2357
Query: 767 attttctcttgtggctcttttgtcaaaccaaacggagaatgga 809
|||||| | || |||| ||||||||||||||| |||||||||
Sbjct: 2356 gttttct-tcgttgctc-tttgtcaaaccaaac-gagaatgga 2317
Score = 789 bits (398), Expect = 0.0
Identities = 542/590 (91%)
Strand = Plus / Minus
Query: 52 tagaacgttagcttggttgaatccgtggtgatcttatttctgtagtaggtcaatttcgat 111
|||||||||||||| || |||| || || |||| |||||||||||| |||||||| |
Sbjct: 1010 tagaacgttagcttagtcaaatctgttgtagtcttgtttctgtagtagtccaatttcgct 951
Query: 112 aattcagcttcattatccttgatgccgcctggagagatcttacccttcaattcaggcaac 171
||||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||
Sbjct: 950 aattcagcttcattatccttgatgccgcctggagaaatcttacccttcaattcaggcaac 891
Query: 172 ttttcgttcaaaatacgtaggatcttttcgaagttgaacttacctttttcgtattcctca 231
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 890 ttttcgttcaaaatacgtaggatcttttcgaagttgaacttacctttttcgtattcctca 831
Query: 232 attccatatccagtgtcactgaccgggaatagtctttgaccattgaattctttcttaccc 291
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 830 attccatatccagtgtcactgaccgggaatagtctttgaccattgaattctttcttaccc 771
Query: 292 aatggcaagacatgtaacttggcgacatcacggacatcacaagcaacaccagctggctgg 351
|||||||||||||||||||||||||||||||||||||||||||||| |||||||||||||
Sbjct: 770 aatggcaagacatgtaacttggcgacatcacggacatcacaagcaagaccagctggctgg 711
Query: 352 ttaaatgggccttcatattctggagttgtcttcaaggccttgttgacgaagtcagcagag 411
|||||||||||||||||||||||||||||||||||||| | || |||| |||||||||
Sbjct: 710 ttaaatgggccttcatattctggagttgtcttcaaggcttgattaacgatatcagcagag 651
Query: 412 gtgtttaaggaagccctagctaaaccgaaagtgaatttttgtggaccgaaaacgtatgga 471
|| || ||||||| | |||| |||||||||||||||||||||||||||||||||||||||
Sbjct: 650 gtattcaaggaagacttagccaaaccgaaagtgaatttttgtggaccgaaaacgtatgga 591
Query: 472 gggttcactgtagtcaaattgaatgtagaattgttgtccttcacgaaatcccaggccaac 531
||||||||||||||||||||||||||||||||||||||||| || |||||||||||||||
Sbjct: 590 gggttcactgtagtcaaattgaatgtagaattgttgtcctttacaaaatcccaggccaac 531
Query: 532 ttttcggcatatttctttagagcgacatatgaagtagcggcatcttcacgagcgtctttc 591
||||||||||||||||| ||| | |||| |||| ||| | ||||||||| |||| |
Sbjct: 530 ttttcggcatatttcttagaagcaatgtatgcagtaacggagttttcacgagcttcttcc 471
Query: 592 caaatgaccgggttccaagtagtttcatcattgatgaaagttgggtcacc 641
|| ||| || ||||||| ||||||||||| |||||| ||||||||||
Sbjct: 470 caggtgataggattccaagaagtttcatcatgaatgaaatttgggtcacc 421
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6258
Number of Sequences: 1807
Number of extensions: 6258
Number of successful extensions: 42
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)