BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZE01FM1.SCF screened BAC_end
(977 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1228 846 0.0
>3x_Contig1228
Length = 5992
Score = 846 bits (427), Expect = 0.0
Identities = 490/507 (96%), Gaps = 3/507 (0%)
Strand = Plus / Minus
Query: 87 tacttctcgtcgttttgatccaatggagagagttgagatatatactgtaaggggattctt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 513 tacttctcgtcgttttgatccaatggagagagttgagatatatactgtaaggggattctt 454
Query: 147 tgtaaaataattttagtttgcgttaaagataacaaaggagtttccgggtatttctcagcg 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 453 tgtaaaataattttagtttgcgttaaagataacaaaggagtttccgggtatttctcagcg 394
Query: 207 ccaagtctatacctttccaaagcagcatcgaaaaattcattcattctctcgtacttcttc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 393 ccaagtctatacctttccaaagcagcatcgaaaaattcattcattctctcgtacttcttc 334
Query: 267 tcttcgtcatcggtttcttccggaaggaaaactgttagctctgccaaagcctgcgcataa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 333 tcttcgtcatcggtttcttccggaaggaaaactgttagctctgccaaagcctgcgcataa 274
Query: 327 atagagtgaaacaaatcgctcagttttatagtgctatcattgtcctgaagacgcaataat 386
|||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 273 atagagtgaacaaaatcgctcagttttatagtgctatcattgtcctgaagacgcaataat 214
Query: 387 ctgtcacattcgtgcactacaccatttaacaatagctgattatctttatccttcaggaaa 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 213 ctgtcacattcgtgcactacaccatttaacaatagctgattatctttatccttcaggaaa 154
Query: 447 gtttcccacaaaccctttagtttggactaactcatcatcggcattctcgttttcatccaa 506
|||||||||||||||||||| ||||||||||||||||||||||| |||||||||||||||
Sbjct: 153 gtttcccacaaaccctttag-ttggactaactcatcatcggcatcctcgttttcatccaa 95
Query: 507 tgcaatttcaatcttggttgctgcagatggggctggtaccgttcccttagaagattgctc 566
|| |||| ||||| | || ||| |||||| |||||||||||||||| | ||||||||||
Sbjct: 94 tgaaattcaaatctggtttcctgaagatggtgctggtaccgttccctcaaaagattgctc 35
Query: 567 tttttggcacagcaacctttttgcttc 593
|| |||||||| ||||||||||||||
Sbjct: 34 -ttctggcacag-aacctttttgcttc 10
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9005
Number of Sequences: 1807
Number of extensions: 9005
Number of successful extensions: 60
Number of sequences better than 1.0e-20: 1
length of query: 977
length of database: 10,358,551
effective HSP length: 16
effective length of query: 961
effective length of database: 10,329,639
effective search space: 9926783079
effective search space used: 9926783079
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)