BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZE01RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1283 1235 0.0
>3x_Contig1283
Length = 6261
Score = 1235 bits (623), Expect = 0.0
Identities = 730/754 (96%), Gaps = 9/754 (1%)
Strand = Plus / Plus
Query: 49 acccaactttgttgggactttcttaggtaccatgtcacagcccattgttcgagaatatat 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2324 acccaactttgttgggactttcttaggtaccatgtcacagcccattgttcgagaatatat 2383
Query: 109 gaataatgcagattgtacgttaattttaggatgtatgatcgaaaacttcaaaaactcgta 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2384 gaataatgcagattgtacgttaattttaggatgtatgatcgaaaacttcaaaaactcgta 2443
Query: 169 ctgtagattcaactacaagagtaaaaaccaaatcttactttggaatgatagagttaaaat 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2444 ctgtagattcaactacaagagtaaaaaccaaatcttactttggaatgatagagttaaaat 2503
Query: 229 tgaaaataatataatacctgatattttacttcatgaactactcccacagctaatagcgtc 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2504 tgaaaataatataatacctgatattttacttcatgaactactcccacagctaatagcgtc 2563
Query: 289 attagatactaccaaaatagtaaactctcgtccagtaacaataccgaatatgatacccag 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2564 attagatactaccaaaatagtaaactctcgtccagtaacaataccgaatatgatacccag 2623
Query: 349 agtagaaccgcaaccggtgacatttttgcgacaggagtacctttggtttaagatgtctac 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2624 agtagaaccgcaaccggtgacatttttgcgacaggagtacctttggtttaagatgtctac 2683
Query: 409 atggctaaaacaaggtgacgttattatttctgaatctggtacctcagctattggtctcct 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2684 atggctaaaacaaggtgacgttattatttctgaatctggtacctcagctattggtctcct 2743
Query: 469 acaacaaaaattcccagataatactaggctagtatcccaagcaatttggaattcatctgg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2744 acaacaaaaattcccagataatactaggctagtatcccaagcaatttggaattcatctgg 2803
Query: 529 ttattctatcggtgcatgccttggaattttggcagcatatcgcgatatggggacattgga 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2804 ttattctatcggtgcatgccttggaattttggcagcatatcgcgatatggggacattgga 2863
Query: 589 taagcataggattatattaatggtgggtggatgggtctttac-atttacttttcaa-aac 646
|||||||||||||||||||||||||||| ||||||||||||| ||||||||| ||| |||
Sbjct: 2864 taagcataggattatattaatggtgggt-gatgggtctttacaatttactttccaagaac 2922
Query: 647 taagccccctattgacccccggtttc-aaccttacatttttgtaataaataattcaggtt 705
||||| || ||||||| | ||||||| |||||||||||||||||||||||||| |||||
Sbjct: 2923 taagcaccatattgacgcacggtttcaaaccttacatttttgtaataaataatcaaggtt 2982
Query: 706 attaccgttgaccngaaccttgaattataaaaaaaacccattctgaacgcttcatacttt 765
| ||||||||| | |||||||||| || | |||| ||||| |||||||||| |||||||
Sbjct: 2983 a-taccgttga-cagaaccttgaa-tagagaaaagaccca-tctgaacgctacatacttc 3038
Query: 766 gaatttccaaccgggggaactattaaaactcccg 799
| || |||||||| ||||||||||||||||||||
Sbjct: 3039 g-atatccaaccgtgggaactattaaaactcccg 3071
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9476
Number of Sequences: 1807
Number of extensions: 9476
Number of successful extensions: 72
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)