BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC30ZE03FM1.SCF screened BAC_end
         (913 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1641                                                        1374   0.0  

>3x_Contig1641 
          Length = 13261

 Score = 1374 bits (693), Expect = 0.0
 Identities = 769/785 (97%), Gaps = 7/785 (0%)
 Strand = Plus / Minus

                                                                         
Query: 86    tgtagtgaatttgcaactgaaaatggaccaaagatgatgtacaccatcggggtgcatccg 145
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10156 tgtagtgaatttgcaactgaaaatggaccaaagatgatgtacaccatcggggtgcatccg 10097

                                                                         
Query: 146   tgtcaggttaacgaattcatgcccaaacactcaaaatcgtaccggaaatcagattcaagc 205
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10096 tgtcaggttaacgaattcatgcccaaacactcaaaatcgtaccggaaatcagattcaagc 10037

                                                                         
Query: 206   gaggatcttccgtttgcaattgaaaaccatcagtttaccaaagctagattgcacgaattg 265
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 10036 gaggatcttccgtttgcaattgaaaaccatcagtttaccaaagctagattgcacgaattg 9977

                                                                         
Query: 266   tatgatttgtggaaactccaagcaatgaccgataacgagcatttcagggccattggtgaa 325
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9976  tatgatttgtggaaactccaagcaatgaccgataacgagcatttcagggccattggtgaa 9917

                                                                         
Query: 326   attgggttggattatgatagattccatttctcgggactggaaatccaaaagttcttcttc 385
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9916  attgggttggattatgatagattccatttctcgggactggaaatccaaaagttcttcttc 9857

                                                                         
Query: 386   ctggaacaattgaagttaagttgcttcttccctgataaaccgttgttcttacacatgaga 445
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9856  ctggaacaattgaagttaagttgcttcttccctgataaaccgttgttcttacacatgaga 9797

                                                                         
Query: 446   agctgtgctgatgatttcttgcacatcttgaaattattcatcaatggtttcaacgatgat 505
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9796  agctgtgctgatgatttcttgcacatcttgaaattattcatcaatggtttcaacgatgat 9737

                                                                         
Query: 506   aaggatttatttggctataaatcgtggatcgatccaagcgtaccagattcaccaatattg 565
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9736  aaggatttatttggctataaatcgtggatcgatccaagcgtaccagattcaccaatattg 9677

                                                                         
Query: 566   aatacagacggctctgtaacttataagttcagtgctgcgaggaaatttgtcgttcactct 625
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9676  aatacagacggctctgtaacttataagttcagtgctgcgaggaaatttgtcgttcactct 9617

                                                                         
Query: 626   ttcacaggatcagtacaagatatggaaatattactggattgctcccaaaa-tgctatttc 684
             |||||||||||||||||||||||||||||||||||||||||||||||||| |||||||||
Sbjct: 9616  ttcacaggatcagtacaagatatggaaatattactggattgctcccaaaattgctatttc 9557

                                                                         
Query: 685   agcgtcaacggctgttcaatgagattctga-gagagcattgaaatgattaaatcacttcc 743
             |||||||||||||||||||||||| ||||| |||||||||||||||||||||||||||||
Sbjct: 9556  agcgtcaacggctgttcaatgaga-tctgaggagagcattgaaatgattaaatcacttcc 9498

                                                                         
Query: 744   tgttgataaattactactggaaacaga-gcaccatggtgcgacctgagaaagacccatgg 802
             ||||||||||||||||||||||||||| ||||||||||||||| |||||| ||| ||| |
Sbjct: 9497  tgttgataaattactactggaaacagacgcaccatggtgcgacgtgagaaggacacat-g 9439

                                                                         
Query: 803   cttattaca-aattttgattcaagattcagattccaaaatcgaaaattgttgggaatcat 861
             |||  |||| | |||||| ||||||| ||||| ||||||||||||||||||||| |||||
Sbjct: 9438  cttcatacagatttttgaatcaagatgcagatcccaaaatcgaaaattgttggg-atcat 9380

                  
Query: 862   ggatt 866
             |||||
Sbjct: 9379  ggatt 9375


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6927
Number of Sequences: 1807
Number of extensions: 6927
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 1
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)