BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZE03RM1.SCF screened BAC_end
(934 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1597 1298 0.0
>3x_Contig1597
Length = 14240
Score = 1298 bits (655), Expect = 0.0
Identities = 732/751 (97%), Gaps = 5/751 (0%)
Strand = Plus / Plus
Query: 54 tttttgccttctgtttgagcgaacgcttttctataggaaaattgccgggtagtacttttc 113
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6834 tttttgccttctgtttgagcgaacgcttttctataggaaaattgccgggtagtacttttc 6893
Query: 114 aaagcaggagatttaattgataatttacttaattttgaacttataatcaggacccaaggt 173
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6894 aaagcaggagatttaattgataatttacttaattttgaacttataatcaggacccaaggt 6953
Query: 174 ttctggtatcatcttttatattccattacctatagtaccaatttattgacattttgtcac 233
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6954 ttctggtatcatcttttatattccattacctatagtaccaatttattgacattttgtcac 7013
Query: 234 aaaagtgtcaaaataaatgaacatgataaagtacccatagttgctaatactaatatatat 293
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7014 aaaagtgtcaaaataaatgaacatgataaagtacccatagttgctaatactaatatatat 7073
Query: 294 cgtcacgtatcacatgaaaacatacactggatgtttcttatgggtgaaatcaagaaactg 353
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7074 cgtcacgtatcacatgaaaacatacactggatgtttcttatgggtgaaatcaagaaactg 7133
Query: 354 aatgctttgcaactagaataaagttgatctgtcgaactgtaatggtattgttggccttta 413
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7134 aatgctttgcaactagaataaagttgatctgtcgaactgtaatggtattgttggccttta 7193
Query: 414 tgagttcactatcatgttccagtttagatcaccagttccgggtaatcattttcaaatttt 473
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7194 tgagttcactatcatgttccagtttagatcaccagttccgggtaatcattttcaaatttt 7253
Query: 474 tttctttggttctctgaataaacaaataaagatgatgttctaaatctaccttgcagaacc 533
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7254 tttctttggttctctgaataaacaaataaagatgatgttctaaatctaccttgcagaacc 7313
Query: 534 aggtctaacagttatgtttctctaagggcactttgtccaattggttaactgattgctcag 593
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7314 aggtctaacagttatgtttctctaagggcactttgtccaattggttaactgattgctcag 7373
Query: 594 cataaaattttgctttactgtatctgtgtacttgtcttttttgattttc-gaaatagggg 652
|||||||||||||||||||||||||||||||||||||||||||| |||| |||||||||
Sbjct: 7374 cataaaattttgctttactgtatctgtgtacttgtcttttttgaatttcggaaatagggt 7433
Query: 653 atagacttgagctaacagtgtatcggcaagacaggacagatgtcaatattatctaccccc 712
||||||||||||||||||||||||||||||||||||||||||||||||| ||||| ||
Sbjct: 7434 atagacttgagctaacagtgtatcggcaagacaggacagatgtcaatatattctacgccg 7493
Query: 713 ttgaaaagccatttgaatggccaatgcaaacttttgcaacccgtttggcaatgttcacgg 772
||||||||| ||| |||||| ||||||||||||| |||||||| || |||||| ||||
Sbjct: 7494 ttgaaaagcaattggaatgg-caatgcaaactttgccaacccgtctgccaatgtcaacgg 7552
Query: 773 gcttaccgatgaaatggaatttggcaatacc 803
|| |||||||| ||||||| |||||||||||
Sbjct: 7553 gc-taccgatg-aatggaa-ttggcaatacc 7580
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8134
Number of Sequences: 1807
Number of extensions: 8134
Number of successful extensions: 63
Number of sequences better than 1.0e-20: 1
length of query: 934
length of database: 10,358,551
effective HSP length: 16
effective length of query: 918
effective length of database: 10,329,639
effective search space: 9482608602
effective search space used: 9482608602
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)