BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZE04RM1.SCF screened BAC_end
(949 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1654 1390 0.0
>3x_Contig1654
Length = 17174
Score = 1390 bits (701), Expect = 0.0
Identities = 756/769 (98%), Gaps = 4/769 (0%)
Strand = Plus / Minus
Query: 48 aattttgccctaggctgctaacagtatcgtcactaataaacttgtcatttcaagaagcaa 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2766 aattttgccctaggctgctaacagtatcgtcactaataaacttgtcatttcaagaagcaa 2707
Query: 108 ttttgctggccaggaccgaattttttctttctctttccttgaatataattgaatgagttt 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2706 ttttgctggccaggaccgaattttttctttctctttccttgaatataattgaatgagttt 2647
Query: 168 tagatcaatatttcgccagatgtcgtcggtagcagcgaacagaagcatagatggtcccat 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2646 tagatcaatatttcgccagatgtcgtcggtagcagcgaacagaagcatagatggtcccat 2587
Query: 228 tgctcagaggatcaccaaaaaagtgaaagatactttcccagatctttcacattttgctat 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2586 tgctcagaggatcaccaaaaaagtgaaagatactttcccagatctttcacattttgctat 2527
Query: 288 tttcaatgactcatacaagcatagcggtcatcatgggattcaagatgctgcgaacaagat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2526 tttcaatgactcatacaagcatagcggtcatcatgggattcaagatgctgcgaacaagat 2467
Query: 348 tgaatcacacttcagactagagatagtgagcggattgttcaaagggaaaagccttcccat 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2466 tgaatcacacttcagactagagatagtgagcggattgttcaaagggaaaagccttcccat 2407
Query: 408 gagacaccgaatggtatatgggatgctaaatgaggaatttgatgatggggtacatgcttt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2406 gagacaccgaatggtatatgggatgctaaatgaggaatttgatgatggggtacatgcttt 2347
Query: 468 acagctaacgacaaaaactccggaggagtatgccaagaagcatgctgaaaattgacgtac 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2346 acagctaacgacaaaaactccggaggagtatgccaagaagcatgctgaaaattgacgtac 2287
Query: 528 gttaaaatcaacctgaaccgataaaatagtttaaaaacttgatacttaagtgtatacata 587
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2286 gttaaaatcaacctgaaccgataaaatagtttaaaaacttgatacttaagtgtatacata 2227
Query: 588 tatcgtgataccaacgcacacatataaacacgccgcattaaacatgtagctggatattat 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2226 tatcgtgataccaacgcacacatataaacacgccgcattaaacatgtagctggatattat 2167
Query: 648 tgaatcaatggtcttcctttagatgagcttcgtactgctctagcgattacaattcattgg 707
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| ||
Sbjct: 2166 tgaatcaatggtcttcctttagatgagcttcgtactgctctagcgataacaattcatcgg 2107
Query: 708 attgtaaattctgcctcatcgttaattttaatcttgatgatccaacccttaccagcttgg 767
|||||||| |||||||||||||||||||||||||||||||||||||| | |||||| |||
Sbjct: 2106 attgtaaa-tctgcctcatcgttaattttaatcttgatgatccaaccttcaccagc-tgg 2049
Query: 768 gtcgctgtttgatcaattggggccgagttagaccaagctttgtttactt 816
||||||| ||||||||||| || ||||| |||| |||||| ||| ||||
Sbjct: 2048 gtcgctg-ttgatcaattgtgg-cgagtcagacaaagcttcgttcactt 2002
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6871
Number of Sequences: 1807
Number of extensions: 6871
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 949
length of database: 10,358,551
effective HSP length: 16
effective length of query: 933
effective length of database: 10,329,639
effective search space: 9637553187
effective search space used: 9637553187
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)