BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZE05FM1.SCF screened BAC_end
(941 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig342 1451 0.0
>3x_Contig342
Length = 2225
Score = 1451 bits (732), Expect = 0.0
Identities = 765/772 (99%), Gaps = 3/772 (0%)
Strand = Plus / Plus
Query: 87 taacaagacccggttacctcgattgaatcacaatggaatatggacacgagctggatataa 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1059 taacaagacccggttacctcgattgaatcacaatggaatatggacacgagctggatataa 1118
Query: 147 atgctctgcttaacctaaaacaatgtgtttaagatgggaatacccagacaataagactga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1119 atgctctgcttaacctaaaacaatgtgtttaagatgggaatacccagacaataagactga 1178
Query: 207 ttgataccttagaaaaaaagtggcaattactaataatacaggtcaataaaactcttccgt 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1179 ttgataccttagaaaaaaagtggcaattactaataatacaggtcaataaaactcttccgt 1238
Query: 267 agtttacttgcctctcgctcaacagaccagaaatgccgcgcgtacttgaacagtgattaa 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1239 agtttacttgcctctcgctcaacagaccagaaatgccgcgcgtacttgaacagtgattaa 1298
Query: 327 tactctcacacgccttaaggtaccagtgtaaaactatcactttggtgttttgtcagggta 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1299 tactctcacacgccttaaggtaccagtgtaaaactatcactttggtgttttgtcagggta 1358
Query: 387 aacaaaacaaaacattctaattcaaaagtatcagaatctctaacttttcaaagcttcgtt 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1359 aacaaaacaaaacattctaattcaaaagtatcagaatctctaacttttcaaagcttcgtt 1418
Query: 447 gggtcaatgttttcatgatgttcattggaaaacgttgaccctcgttagaaattgcgatca 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1419 gggtcaatgttttcatgatgttcattggaaaacgttgaccctcgttagaaattgcgatca 1478
Query: 507 tattatacggaaagcagggtaacgatacatacacagacgcatatagtgagtccacactat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1479 tattatacggaaagcagggtaacgatacatacacagacgcatatagtgagtccacactat 1538
Query: 567 cacgtgattcatattgctaatatatatgcataaatattcagtacaactgagatatcacct 626
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1539 cacgtgattcatattgctaatatatatgcataaatattcagtacaactgagatatcacct 1598
Query: 627 attctatcatgcgcagtgaactgtttacccgatgggtagtacttgtctt-aacaggaggc 685
||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||
Sbjct: 1599 attctatcatgcgcagtgaactgtttacccgatgggtagtacttgtcttaaacaggaggc 1658
Query: 686 gggatattgtttgtttggaacaatttctcactggactgttgtaattgtttccagatgttt 745
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1659 gggatattgtttgtttggaacaatttctcactggactgttgtaattgtttccagatgttt 1718
Query: 746 tcgtacttatctgtcttagatcccagcggacgttggaaatacccttggtgtagtagcgtt 805
|||||||||||||||||||||||||||| |||||||||||||||||| |||||||||||
Sbjct: 1719 tcgtacttatctgtcttagatcccagcgtacgttggaaatacccttgtagtagtagcgtt 1778
Query: 806 attttccgtta-acaatcaagtgattcggccatgatattcaagtttttatct 856
| |||||| || ||||||||||||||||||||||||||||||||||||||||
Sbjct: 1779 a-tttccgctagacaatcaagtgattcggccatgatattcaagtttttatct 1829
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6668
Number of Sequences: 1807
Number of extensions: 6668
Number of successful extensions: 49
Number of sequences better than 1.0e-20: 1
length of query: 941
length of database: 10,358,551
effective HSP length: 16
effective length of query: 925
effective length of database: 10,329,639
effective search space: 9554916075
effective search space used: 9554916075
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)