BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZE06FM1.SCF screened BAC_end
(911 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1768 1055 0.0
>3x_Contig1768
Length = 25668
Score = 1055 bits (532), Expect = 0.0
Identities = 579/591 (97%), Gaps = 3/591 (0%)
Strand = Plus / Minus
Query: 87 tggatatattcatccaatgcatcattcccatcatccaaatcatccttgctgttgtctttt 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24677 tggatatattcatccaatgcatcattcccatcatccaaatcatccttgctgttgtctttt 24618
Query: 147 gtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtggaattt 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24617 gtcagaacatgagtatttgtatcgtttctacgcggcttgaataacgttgatgtggaattt 24558
Query: 207 tcatcatcagattcactatcacttcccccaaaagcaggacgttttctcgaacactgtccc 266
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24557 tcatcatcagattcactatcacttcccccaaaagcaggacgttttctcgaacactgtccc 24498
Query: 267 cttcgtttgttcctgtccctatccgcagactttatactggtaagttttatatccttttgc 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24497 cttcgtttgttcctgtccctatccgcagactttatactggtaagttttatatccttttgc 24438
Query: 327 ttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagtctctct 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24437 ttgagttcatcttgttgtttcttcttcttcttccatgcctctagtttcttcagtctctct 24378
Query: 387 tccttagcatctacagaaacagatgctgtaacatcattattcagtttctgttttttccac 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24377 tccttagcatctacagaaacagatgctgtaacatcattattcagtttctgttttttccac 24318
Query: 447 ttagcaagtttctcttgcctaatccgtagcttttccgtttgatccataacgctcaccttc 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24317 ttagcaagtttctcttgcctaatccgtagcttttccgtttgatccataacgctcaccttc 24258
Query: 507 gtaatttaattgggtcttttttcttctttctgngtgctatctttcaagtatt-atcctga 565
|||||||||||||||||||||||||||||||| ||||||||||||||||||| |||||||
Sbjct: 24257 gtaatttaattgggtcttttttcttctttctgtgtgctatctttcaagtattaatcctga 24198
Query: 566 atggttttaaggttttgttaattc-atattattggtattttgatattgaaggaaaatctt 624
|||||||||||||||||||||||| ||||||| |||||||||||||||||||||| |||
Sbjct: 24197 atggttttaaggttttgttaattcaatattataggtattttgatattgaaggaaatcctt 24138
Query: 625 ttcaaatgggt-tttttaactacttaatgtagatgggaaacacgcttccta 674
| ||||||||| |||| ||||||| |||| |||||||||||||||| ||||
Sbjct: 24137 tccaaatgggtattttaaactactaaatgaagatgggaaacacgctaccta 24087
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 10,677
Number of Sequences: 1807
Number of extensions: 10677
Number of successful extensions: 276
Number of sequences better than 1.0e-20: 1
length of query: 911
length of database: 10,358,551
effective HSP length: 16
effective length of query: 895
effective length of database: 10,329,639
effective search space: 9245026905
effective search space used: 9245026905
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)