BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZE06RM1.SCF screened BAC_end
(915 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig904 1376 0.0
>3x_Contig904
Length = 3319
Score = 1376 bits (694), Expect = 0.0
Identities = 822/858 (95%), Gaps = 5/858 (0%)
Strand = Plus / Minus
Query: 46 gcttttcaaaataaattactattaaacgaacaagaaaccgatgaggacggcggaaattat 105
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 915 gcttttcaaaataaattactattaaacgaacaagaaaccgatgaggacggcggaaattat 856
Query: 106 gctacttgtgatggatgtggcgggttgattaaaccgaagattgtattcttcggtgaaggg 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 855 gctacttgtgatggatgtggcgggttgattaaaccgaagattgtattcttcggtgaaggg 796
Query: 166 ttacctaccgagttcttcgatacgtgggatttggatagctctacgaaggaaaaaacagtt 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 795 ttacctaccgagttcttcgatacgtgggatttggatagctctacgaaggaaaaaacagtt 736
Query: 226 tgtattgtctgtggtacgtccttaactgtgtacccgtttgcatcgttacccatggaggca 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 735 tgtattgtctgtggtacgtccttaactgtgtacccgtttgcatcgttacccatggaggca 676
Query: 286 ccgaattcgtggcttagggtgctactgaaccgtgagatagttggtgatttcaagacctca 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 675 ccgaattcgtggcttagggtgctactgaaccgtgagatagttggtgatttcaagacctca 616
Query: 346 cgccaagatactgatctgatattcaagggctctgcagattatgcagcctttttgcttgcc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 615 cgccaagatactgatctgatattcaagggctctgcagattatgcagcctttttgcttgcc 556
Query: 406 caagagttgtgctggctcgaagatttggaaaacctcagcggcaaacaatttaagccggaa 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 555 caagagttgtgctggctcgaagatttggaaaacctcagcggcaaacaatttaagccggaa 496
Query: 466 tcgaaaacgaaaacaaaggttcatataaataaacctgaacctgaacaacaggagaagatc 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 495 tcgaaaacgaaaacaaaggttcatataaataaacctgaacctgaacaacaggagaagatc 436
Query: 526 aacacgaaagaggaagaggtattgaaagaggtcacggaggaaatagcacttgagctaaat 585
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 435 aacacgaaagaggaagaggtattgaaagaggtcacggaggaaatagcacttgagctaaat 376
Query: 586 aatctaaccattaaagaatgaacaacacagcgacaacatctggtaatgttacatctttcg 645
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 375 aatctaaccattaaagaatgaacaacacagcgacaacatctggtaatgttacatctttcg 316
Query: 646 caaagtgggcttttgaatcgtcttcggttcgaggcacttcttccgtcggaaccactacat 705
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 315 caaagtgggcttttgaatcgtcttcggtcgaaggcacttcttccgtcggaaccactacat 256
Query: 706 cggattatcaatcttaaattaattc-agggttagccagcactcaacatttaagaaacgta 764
||||| |||||||| ||| |||||| ||||||||| ||||||||||| |||||||||||
Sbjct: 255 cggataatcaatctcaaaataattcaagggttagcaggcactcaacatctaagaaacgta 196
Query: 765 aagtcgattggcagccacttattttgtgattatcaaat-ttccccaggaaaggaattgtc 823
|||||||| |||||||| |||||| |||||||||| || ||||||||| |||||
Sbjct: 195 aagtcgataggcagccaactatttttgaattatcaaatcatcagcaggaaagggattgtt 136
Query: 824 ctttgcccattcaaaaatcaatgccaacttggccattccaaatttgagttcaaggttttc 883
||||||| || ||||||||||| |||| || || ||||||| |||| |||||| | |
Sbjct: 135 ctttgccaatcagaaaatcaatgcaaactagg-caatccaaatctgag-tcaagg-tata 79
Query: 884 cttcaagaaataaaaaga 901
| ||||||||||||||||
Sbjct: 78 cgtcaagaaataaaaaga 61
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6743
Number of Sequences: 1807
Number of extensions: 6743
Number of successful extensions: 46
Number of sequences better than 1.0e-20: 1
length of query: 915
length of database: 10,358,551
effective HSP length: 16
effective length of query: 899
effective length of database: 10,329,639
effective search space: 9286345461
effective search space used: 9286345461
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)