BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZE07FM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1744 1178 0.0
>3x_Contig1744
Length = 24119
Score = 1178 bits (594), Expect = 0.0
Identities = 716/750 (95%), Gaps = 5/750 (0%)
Strand = Plus / Minus
Query: 86 taagtgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggtccta 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15913 taagtgctcatttacacaaaccttccatcgccaacgtcagacagccatcaatgggtccta 15854
Query: 146 ctttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatggatg 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15853 ctttcggtgtgaaaggtggtgctgcaggtggtgggtatgctcaggttatcccaatggatg 15794
Query: 206 agttcaacatgcatttaactggtgatattcatgcaatcggtgctgctaataacttactag 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15793 agttcaacatgcatttaactggtgatattcatgcaatcggtgctgctaataacttactag 15734
Query: 266 cagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgtttt 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15733 cagcagccatagatacaaggatgttccatgaggctactcaaaagaagcacgaaacgtttt 15674
Query: 326 acaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttgacaa 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15673 acaagagattggtccctgttaagaagggtgtcagatcatttacaccatctatgttgacaa 15614
Query: 386 ggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaatta 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15613 ggttgaacaaattaggaattaacaaaactaatcctgatgatttaaataccgaggaaatta 15554
Query: 446 tcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttgacg 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15553 tcaaattcgcacgtctaaacattgacccagacactattactatcaagagggtggttgacg 15494
Query: 506 tcaacgatagaatgttacgtcaaatcacaattggtcaagcgccaactgaaaagggtttca 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15493 tcaacgatagaatgttacgtcaaatcacaattggtcaagcgccaactgaaaagggtttca 15434
Query: 566 caaggcaaacaggatttgacatcactgtcgcatcagagttgatggcaattttagcgttgt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 15433 caaggcaaacaggatttgacatcactgtcgcatcagagttgatggcaattttagcgttgt 15374
Query: 626 ctaaggacttgaaagatttgagagagcgtgtcggacctatcgtaattgg-ttttactacg 684
|||||||||||||||||||||||||||||||||||| |||||||||||| | | ||||||
Sbjct: 15373 ctaaggacttgaaagatttgagagagcgtgtcggacgtatcgtaattggctctaactacg 15314
Query: 685 aaaaag-accttttactgtttacgacctttgatgtgctagtcccatttgctgc-cttttt 742
|||||| |||| | |||||| ||||| || ||||||| || ||| ||||||| ||| |
Sbjct: 15313 aaaaagaacctataactgttaacgacattggatgtgcaggtgcca-ttgctgcacttcta 15255
Query: 743 aagggtgccctatagccttactttatggaaaccctttaagggacaccagtttttggttct 802
|||| |||| || ||||| || | ||| |||| ||| |||||||||||| |||||||||
Sbjct: 15254 aaggatgccgtaaagcctaacctgatgcaaacgcttgaagggacaccag-ttttggttca 15196
Query: 803 tgttggtcccattggaaacatttcttttgg 832
|| |||||| ||| |||||| ||| ||||
Sbjct: 15195 tgctggtccatttgcaaacatctctattgg 15166
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 5669
Number of Sequences: 1807
Number of extensions: 5669
Number of successful extensions: 35
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)