BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZE07RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1520 1275 0.0
>3x_Contig1520
Length = 10750
Score = 1275 bits (643), Expect = 0.0
Identities = 771/801 (96%), Gaps = 11/801 (1%)
Strand = Plus / Plus
Query: 45 gcttcaaataatgatccaagttgtcatcgatttgggctgggaatctttcctggtgtctta 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9265 gcttcaaataatgatccaagttgtcatcgatttgggctgggaatctttcctggtgtctta 9324
Query: 105 agagctgatgagttaggatgatcaaatcgtattcgttggaaccaggaacatctttacgca 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9325 agagctgatgagttaggatgatcaaatcgtattcgttggaaccaggaacatctttacgca 9384
Query: 165 acctcgtgttaatatgaatactcttcgtagctacttctcccaacatctcgtcatctcctt 224
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9385 acctcgtgttaatatgaatactcttcgtagctacttctcccaacatctcgtcatctcctt 9444
Query: 225 cgatattgtcagcttcttcttctttcgtttcgacattctcagtgggctcttcttccccgt 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9445 cgatattgtcagcttcttcttctttcgtttcgacattctcagtgggctcttcttccccgt 9504
Query: 285 ataacatgtcgtctggaatttcattcaattgtctactcaaaattatttttgccctctttt 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9505 ataacatgtcgtctggaatttcattcaattgtctactcaaaattatttttgccctctttt 9564
Query: 345 gcatctcaatatgacctatgatagtggcttctttcactctgggtctgtactcttttccca 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9565 gcatctcaatatgacctatgatagtggcttctttcactctgggtctgtactcttttccca 9624
Query: 405 ttaaatcgttcaaagcaacaataccagtggctggcccataaccaacatctaatactcttt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9625 ttaaatcgttcaaagcaacaataccagtggctggcccataaccaacatctaatactcttt 9684
Query: 465 gaggattgaaactctcccctacccttttcttaagttctgataaagattgatatatggcag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9685 gaggattgaaactctcccctacccttttcttaagttctgataaagattgatatatggcag 9744
Query: 525 cataattctgcacaaagattgatgcgatatgagaatccacttcgatgttcgatgatgtag 584
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9745 cataattctgcacaaagattgatgcgatatgagaatccacttcgatgttcgatgatgtag 9804
Query: 585 gtcgatgaagggagcttttcgtataactccacgaaatatttggatgccgctctttttaga 644
||||||||||||||| ||||||||||||||||||||||||||||||| |||||| |||||
Sbjct: 9805 gtcgatgaagggagc-tttcgtataactccacgaaatatttggatgcggctcttcttaga 9863
Query: 645 -tacccggtatatgtagagacattatgttgttctggattgcttgacttatcacagaccgc 703
|||| ||||||||||||||||||||||||||||||||||||||||| |||||||| ||
Sbjct: 9864 ttaccaggtatatgtagagacattatgttgttctggattgcttgactcatcacaga-cgg 9922
Query: 704 catttggatctgatctttcaatacccgctccttaaagagttttggggtaaaggtcttgcc 763
|| ||||||||||||| |||||||||| ||||| ||||||||| ||||| | ||||||||
Sbjct: 9923 caattggatctgatctctcaatacccg-tccttcaagagtttt-gggtagaagtcttgcc 9980
Query: 764 ttcctttggcttttttacctttgnaaaggaattcccattttgagctctggaaactcccct 823
|||| | || |||| ||| ||| ||| | ||||||||||||| ||||| || || |||
Sbjct: 9981 -tcctct-gcattttcacc-ttgtaaatg-attcccattttgatctctgtaa--tctcct 10034
Query: 824 ttaaccttttccgaaagcaaa 844
|||||||| ||||||||||||
Sbjct: 10035 ttaaccttatccgaaagcaaa 10055
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7515
Number of Sequences: 1807
Number of extensions: 7515
Number of successful extensions: 62
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)