BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZE09RM1.SCF screened BAC_end
(928 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig409 1217 0.0
>3x_Contig409
Length = 2404
Score = 1217 bits (614), Expect = 0.0
Identities = 669/682 (98%), Gaps = 4/682 (0%)
Strand = Plus / Minus
Query: 50 tatagaaagcaacaaagttcgtggattataactatcataaacggacactaacccagtagc 109
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2258 tatagaaagcaacaaagtacgtggattataactatcataaacggacactaacccagtagc 2199
Query: 110 gtcacctgctactaaaagtttaccgtcttgacggaaagtggccgaatgcaccacatcttt 169
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2198 gtcacctgctactaaaagtttaccgtcttgacggaaagtggccgaatgcaccacatcttt 2139
Query: 170 aaacctagaaaacgtcttgatcacttgtcttgtccttgacgagaagacctgtaccctagt 229
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2138 aaacctagaaaacgtcttgatcacttgtcttgtccttgacgagaagacctgtaccctagt 2079
Query: 230 agaagaggtaactgcaaaatcatgtggatgctggggattgaaggcaatatgagtcactgc 289
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2078 agaagaggtaactgcaaaatcatgtggatgctggggattgaaggcaatatgagtcactgc 2019
Query: 290 attgtgctctttaacaagctgagtagatgaataagacctccagtacctctgctctggggt 349
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2018 attgtgctctttaacaagctgagtagatgaataagacctccagtacctctgctctggggt 1959
Query: 350 ggtctgctttggtaacacaggagcctttaccggcgtcactctaggtctcacagacgacat 409
|| |||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1958 ggactgctttggtaacacaggagcctttaccggcgtcactctaggtctcacagacgacat 1899
Query: 410 tttcttcacaatatttctaccaatctgatcgcctgaatcacctctatcacttaacagtag 469
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1898 tttcttcacaatatttctaccaatctgatcgcctgaatcacctctatcacttaacagtag 1839
Query: 470 tctgacgataccaaaccgactgatataactcgcaaattacagggaaatctattttatcaa 529
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1838 tctgacgataccaaaccgactgatataactcgcaaattacagggaaatctattttatcaa 1779
Query: 530 ccatgcgatgagctaaggcttcaatcattttttttttccaaaatctggtttcttttcttt 589
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1778 ccatgcgatgagctaaggcttcaatcattttttttttccaaaatctggtttcttttcttt 1719
Query: 590 gaagactcgaagaatctcgttgattgtgatttttcagagaagaataaccgttcactgtac 649
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1718 gaagactcgaagaatctcgttgattgtgatttttcagagaagaataaccgttcactgtac 1659
Query: 650 ttttacagcagnataaagggccctttaggcccctttatcttgcttttaaccttgtttccc 709
||| ||||| |||||||| |||||| | ||||||||| |||||||||||| |||||||
Sbjct: 1658 tttacaagcag-ataaaggg-cctttaaggccctttatc-tgcttttaacctggtttccc 1602
Query: 710 agattttttttgattcccaggt 731
||| |||| |||||||||||||
Sbjct: 1601 aga-ttttcttgattcccaggt 1581
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,655
Number of Sequences: 1807
Number of extensions: 14655
Number of successful extensions: 91
Number of sequences better than 1.0e-20: 1
length of query: 928
length of database: 10,358,551
effective HSP length: 16
effective length of query: 912
effective length of database: 10,329,639
effective search space: 9420630768
effective search space used: 9420630768
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)