BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZE10FM1.SCF screened BAC_end
(986 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1638 716 0.0
>3x_Contig1638
Length = 14042
Score = 716 bits (361), Expect = 0.0
Identities = 455/480 (94%), Gaps = 6/480 (1%)
Strand = Plus / Plus
Query: 75 ccctctctggttgtcatgtcggagtttgcgctcaattcgtcgtttatacaggaatctatt 134
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9594 ccctctctggttgtcatgtcggagtttgcgctcaattcgtcgtttatacaggaatctatt 9653
Query: 135 ttgtacatagtggattctcttaatctacgccgagattgttgaaaccggacctggatttgg 194
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9654 ttgtacatagtggattctcttaatctacgccgagattgttgaaaccggacctggatttgg 9713
Query: 195 ccctcattctttctatacgtgcctttaattggttcgtaacttctgcagctcgtttccacg 254
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9714 ccctcattctttctatacgtgcctttaattggttcgtaacttctgcagctcgtttccacg 9773
Query: 255 attcctcttgcaacatatggttgttcaagtttagggaattgacacgtctaggtagatcgt 314
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9774 attcctcttgcaacatatggttgttcaagtttagggaattgacacgtctaggtagatcgt 9833
Query: 315 cgctactttcactaggcgatctgaccctttgaggagtcgtagctattttttagtagatct 374
||||||||||||||||||||||||||||||||||||||||||| ||||||||||||||
Sbjct: 9834 cgctactttcactaggcgatctgaccctttgaggagtcgtagc--atttttagtagatct 9891
Query: 375 cagaggtgataaggtagttgcttgtaatcttcctttgct-atggacgatgat-tggtcga 432
|||||||||||||||||||||| |||||||||| |||| |||||||| ||| ||| ||
Sbjct: 9892 cagaggtgataaggtagttgctgttaatcttcctctgctaatggacgaggatatgggtga 9951
Query: 433 atttgtttacatggtatcggaagtaccgcccgttagtttac-ctcttaacttcttgatct 491
|| |||| ||||||||||||||||||||||||| ||||||| ||| ||||| ||||||||
Sbjct: 9952 atctgttgacatggtatcggaagtaccgcccgtcagtttactctc-taactccttgatct 10010
Query: 492 ttaaattcctattgttcaatcgatccttcgaattctgcaattgcttttgttaattcgaaa 551
|||||||| || ||||||| |||||||||||| |||||||||| ||||| |||| ||||
Sbjct: 10011 ttaaattcttagcgttcaattgatccttcgaatcctgcaattgcctttgtaaattggaaa 10070
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8184
Number of Sequences: 1807
Number of extensions: 8184
Number of successful extensions: 88
Number of sequences better than 1.0e-20: 1
length of query: 986
length of database: 10,358,551
effective HSP length: 16
effective length of query: 970
effective length of database: 10,329,639
effective search space: 10019749830
effective search space used: 10019749830
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)