BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZE10RM1.SCF screened BAC_end
(1020 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1758 882 0.0
>3x_Contig1758
Length = 25930
Score = 882 bits (445), Expect = 0.0
Identities = 483/493 (97%), Gaps = 2/493 (0%)
Strand = Plus / Minus
Query: 51 ctcgataagattttctctggtatgagtcgtaagtacgaattggtcttgtgaatattccgg 110
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11965 ctcgataagattttctctggtatgagtcgtaagtacgaattggtcttgtgaatattccgg 11906
Query: 111 ccagtgagatttgataacctcatatatcgttctgacagtatcatgcattgcatcgaacct 170
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11905 ccagtgagatttgataacctcatatatcgttctgacagtatcatgcattgcatcgaacct 11846
Query: 171 tctcactagtcttttaccatcaccggatcgtacttgtattctggttgtgattccaggttt 230
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11845 tctcactagtcttttaccatcaccggatcgtacttgtattctggttgtgattccaggttt 11786
Query: 231 gttatcaggttctgcatgttctattggtttgattgagtcgaagagtttccattgcgctcc 290
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11785 gttatcaggttctgcatgttctattggtttgattgagtcgaagagtttccattgcgctcc 11726
Query: 291 gtcgggctcttcagtttcttcggtttcttccacttgatcagatttctcatttgtttcgtc 350
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11725 gtcgggctcttcagtttcttcggtttcttccacttgatcagatttctcatttgtttcgtc 11666
Query: 351 cgaggtagtaggagtctggttgcctagcgattctcgtatggccaattcaagctgtttttc 410
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 11665 cgaggtagtaggagtctggttgcctagcgattctcgtatggccaattcaagctgtttttc 11606
Query: 411 ctcacttaaagtgctgggatcaatctttggagtgggttcctttacaggtggattattagt 470
|||||||||||||||||||||||||||||||||||||||||| |||||||||||| ||||
Sbjct: 11605 ctcacttaaagtgctgggatcaatctttggagtgggttccttaacaggtggattagtagt 11546
Query: 471 agtgggacctaatgagaatttcctttagacatatctttagctcttgcctgaaattttcca 530
||||||| |||||||||| ||||| |||| |||||| ||||||||| ||||||||||||
Sbjct: 11545 agtgggatctaatgagaa-ttcctctagaaatatctctagctcttgtctgaaattttcc- 11488
Query: 531 acggttggcactt 543
|| ||||||||||
Sbjct: 11487 acagttggcactt 11475
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7741
Number of Sequences: 1807
Number of extensions: 7741
Number of successful extensions: 65
Number of sequences better than 1.0e-20: 1
length of query: 1020
length of database: 10,358,551
effective HSP length: 16
effective length of query: 1004
effective length of database: 10,329,639
effective search space: 10370957556
effective search space used: 10370957556
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)