BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZE11RM1.SCF screened BAC_end
(946 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1774 1332 0.0
>3x_Contig1774
Length = 27771
Score = 1332 bits (672), Expect = 0.0
Identities = 753/774 (97%), Gaps = 6/774 (0%)
Strand = Plus / Minus
Query: 44 gcttaaaca-gatgcacccgtctgaaaatctgatgtaacaactgtcaaccaacacaatgg 102
||||||||| ||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14715 gcttaaacaagatgcacccgtctgaaaatctgatgtaacaactgtcaaccaacacaatgg 14656
Query: 103 acagttactgatgcttcaattgtctaagtcaaaggttcactttcgttgtttctacatgtt 162
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14655 acagttactgatgcttcaattgtctaagtcaaaggttcactttcgttgtttctacatgtt 14596
Query: 163 tagctatttcgagatctcgtaaaactgacagaaagtgaaaaatataaaaccgggttattt 222
||||||||||||||||||||||||||||||||||||||||||||||||||||||| | |
Sbjct: 14595 tagctatttcgagatctcgtaaaactgacagaaagtgaaaaatataaaaccgggtaacat 14536
Query: 223 caatgagagcttcattatttaatgaacagtgttatgcatcactttcgtttcttaatagct 282
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14535 caatgagagcttcattatttaatgaacagtgttatgcatcactttcgtttcttaatagct 14476
Query: 283 gctaaatacacagagatgatgtctatacatgagttgttttaacagcctgagtgctttgca 342
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14475 gctaaatacacagagatgatgtctatacatgagttgttttaacagcctgagtgctttgca 14416
Query: 343 acgatcactatctgttgccagaagtgtttgtatgattgtttaagggattttctagtaact 402
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14415 acgatcactatctgttgccagaagtgtttgtatgattgtttaagggattttctagtaact 14356
Query: 403 gatagtttagttcaaatcatattgcaaagaacatgatatttacctctccttcagcaggtg 462
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14355 gatagtttagttcaaatcatattgcaaagaacatgatatttacctctccttcagcaggtg 14296
Query: 463 gctgggcgtcgtctccgacaccttcgttgttatttcccccaatttggaaaccattgaatc 522
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14295 gctgggcgtcgtctccgacaccttcgttgttatttcccccaatttggaaaccattgaatc 14236
Query: 523 taatattcacgttgcctcttagaaatgagactacaaaagaaatgagaattacagcaagtg 582
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 14235 taatattcacgttgcctcttagaaatgagactacaaaagaaatgagaattacagcaagtg 14176
Query: 583 ttattgtgatcatgagcacctcttcattcatttcaataggaattgatntgatgtacctca 642
||||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 14175 ttattgtgatcatgagcacctcttcattcatttcaataggaattgatttgatgtacctca 14116
Query: 643 tggcactttctgtaccacgatttagccttgaagaacctggtctcttgagtaggtttctta 702
|||||| ||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 14115 tggcac-ttctgtaccacgatttagcctcgaagaacctggtctcttgagtaggtttctta 14057
Query: 703 acttttttttcattcagagtgactctttcaggagaagtccatttgtcccattttttttgg 762
||||||||| ||| ||||||||||| ||||||||||||||||||||||||||||| |
Sbjct: 14056 actttttttccatcaggagtgactcttccaggagaagtccatttgtcccattttttt--g 13999
Query: 763 gaagccaattatttaacgttggatacattaaaatgccacattgttctcggatat 816
| ||||||||||| |||| | ||||||| |||||| |||| |||||||||||||
Sbjct: 13998 ggagccaattattaaacg-tagatacatcaaaatg-cacaatgttctcggatat 13947
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 9180
Number of Sequences: 1807
Number of extensions: 9180
Number of successful extensions: 54
Number of sequences better than 1.0e-20: 1
length of query: 946
length of database: 10,358,551
effective HSP length: 16
effective length of query: 930
effective length of database: 10,329,639
effective search space: 9606564270
effective search space used: 9606564270
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)