BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZE12FM1.SCF screened BAC_end
(917 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1059 1277 0.0
>3x_Contig1059
Length = 3822
Score = 1277 bits (644), Expect = 0.0
Identities = 744/772 (96%), Gaps = 4/772 (0%)
Strand = Plus / Minus
Query: 87 ttctaatttgatagatcaaggtatcgacgctttggttgtaattggtggtgacggttcact 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2796 ttctaatttgatagatcaaggtatcgacgctttggttgtaattggtggtgacggttcact 2737
Query: 147 aactggtgcagacttgttcagatccgaatggccatctctagttgaagaactagtgaagga 206
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2736 aactggtgcagacttgttcagatccgaatggccatctctagttgaagaactagtgaagga 2677
Query: 207 cggtaagttttctgaggacgaagttgctctataccaaaacttaaccattgttggtatggt 266
|||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2676 cggtaagtttactgaggacgaagttgctctataccaaaacttaaccattgttggtatggt 2617
Query: 267 cggctccatcgataacgatatgtctggtactgattctaccattggtgcttactctgcttt 326
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2616 cggctccatcgataacgatatgtctggtactgattctaccattggtgcttactctgcttt 2557
Query: 327 ggaaagaatctgtgagatggttgattacatcgacgctactgctaagtcacattcaagagc 386
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2556 ggaaagaatctgtgagatggttgattacatcgacgctactgctaagtcacattcaagagc 2497
Query: 387 atttgttgtggaagtgatgggtaggcattgtggttggttaggtctaatgtctggtatcgc 446
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2496 atttgttgtggaagtgatgggtaggcattgtggttggttaggtctaatgtctggtatcgc 2437
Query: 447 taccgcggctgattacattttcattccagagagagcagctcctcacggcaaatggcaaga 506
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2436 taccgcggctgattacattttcattccagagagagcagctcctcacggcaaatggcaaga 2377
Query: 507 tgagttgaaacgtgtttgtcaaaggcatagagaaaagggtcgtagaaataacacagttat 566
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2376 tgagttgaaacgtgtttgtcaaaggcatagagaaaagggtcgtagaaataacacagttat 2317
Query: 567 cgttgcagaaggtgcattggatgatcaatttaacccaattaccgccgaacaagttaagga 626
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 2316 cgttgcagaaggtgcattggatgatcaattaaacccaattaccgccgaacaagttaagga 2257
Query: 627 tgtcttggtagaacttggtttaaacaccaaaatcactacattggaacacgttcaaagagg 686
|||||||||||||||||||||| ||||||||||||||||||||| |||||||||||||||
Sbjct: 2256 tgtcttggtagaacttggtttagacaccaaaatcactacattgggacacgttcaaagagg 2197
Query: 687 tggtccagctgtggcacatgatagatggttacctactttgcaaggtgttgatgcctttca 746
|||| |||||||||||||||||||||||||| ||||||||||||||||||||| || |||
Sbjct: 2196 tggtacagctgtggcacatgatagatggttagctactttgcaaggtgttgatg-ctgtca 2138
Query: 747 agcccatttctg-acatgactccagaaactccattctctttgattggttttctcgaaaaa 805
|| ||| | ||| ||||||||||||| ||||||| | ||||||||| ||||||||||
Sbjct: 2137 aggcca-tcctgaacatgactccagagactccatctccattgattggtattctcgaaaat 2079
Query: 806 taggttatcaaaagccccttggttgtatttgtggaaactaacaaaaaaagtt 857
||||||||| || |||||||||| || ||| |||||| |||||| |||||
Sbjct: 2078 aaggttatcagaatgcccttggttgaatctgt-gaaactcacaaaacaagtt 2028
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6718
Number of Sequences: 1807
Number of extensions: 6718
Number of successful extensions: 47
Number of sequences better than 1.0e-20: 1
length of query: 917
length of database: 10,358,551
effective HSP length: 16
effective length of query: 901
effective length of database: 10,329,639
effective search space: 9307004739
effective search space used: 9307004739
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)