BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZE12RM1.SCF screened BAC_end
(908 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1801 1150 0.0
>3x_Contig1801
Length = 57606
Score = 1150 bits (580), Expect = 0.0
Identities = 713/744 (95%), Gaps = 10/744 (1%)
Strand = Plus / Minus
Query: 45 gctttaaatttcagatcgtggaaactttataattttattttttgaatcattatagtagtg 104
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41772 gctttaaatttcagatcgtggaaactttataattttattttttgaatcattatagtagtg 41713
Query: 105 aataagtacaagatgcccgaatagaaatgaaaaaaaggttggaccaagttctccaaagcc 164
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41712 aataagtacaagatgcccgaatagaaatgaaaaaaaggttggaccaagttctccaaagcc 41653
Query: 165 cttggttcaatttacatccagtgatacttaacaagaattgtttgcaaatatgtttttatt 224
|||||||||||||||||||||||||||||||||||||||||||||||||||||| |||
Sbjct: 41652 cttggttcaatttacatccagtgatacttaacaagaattgtttgcaaatatgttaagatt 41593
Query: 225 gagcaggccatttcgtttggtttcgccaactgttttatcacgagtcagatgttatgcaca 284
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41592 gagcaggccatttcgtttggtttcgccaactgttttatcacgagtcagatgttatgcaca 41533
Query: 285 agcttctccattaggtgtggatcacagtatcgagaataatttacaaacagagactaatag 344
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41532 agcttctccattaggtgtggatcacagtatcgagaataatttacaaacagagactaatag 41473
Query: 345 attgtccaagactttgactaagttttgggaacaagtgagtttagaagaaacccccgaaaa 404
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41472 attgtccaagactttgactaagttttgggaacaagtgagtttagaagaaacccccgaaaa 41413
Query: 405 tgttaccattaaattggattctaagcctttgcgtactcctttggggaaccctttaacttt 464
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41412 tgttaccattaaattggattctaagcctttgcgtactcctttggggaaccctttaacttt 41353
Query: 465 accacaatctcgtaagcttttatcggttatggttctcaatgaatggagtaatcttcctag 524
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 41352 accacaatctcgtaagcttttatcggttatggttctcaatgaatggagtaatcttcctag 41293
Query: 525 tttatctgtcaagccttatgttttacctttaacctccttagtttcccgttgcattgattt 584
|||||||||||||||||||||||||||||||||||| |||||||||||||||||||||||
Sbjct: 41292 tttatctgtcaagccttatgttttacctttaacctctttagtttcccgttgcattgattt 41233
Query: 585 gg-aaaggcc-atgaggacggtgtaga-ccagaac-tgttgcgaagata-gtgggaacag 639
|| ||||||| |||||||||||||||| ||||||| ||||||||||||| ||||||||||
Sbjct: 41232 ggaaaaggccaatgaggacggtgtagacccagaacttgttgcgaagataggtgggaacag 41173
Query: 640 ag-aaagtttactgaaggtc-tttgagatatttagatactgatactttatttaggtttt- 696
|| |||||| |||||||||| ||||||||||||||||||||||||| |||| |||||
Sbjct: 41172 agaaaagttaactgaaggtcttttgagatatttagatactgatactctattagtgttttc 41113
Query: 697 ttcagc-aatgaatacgaagg-gcgcttaaaaaggcttaggatgaattgtatctcccgta 754
| |||| |||||||||||||| ||||| | ||||||| | |||||||||||||| |||
Sbjct: 41112 tccagcaaatgaatacgaaggtgcgctaagaaaggctcaagatgaattgtatctaccgat 41053
Query: 755 attttccgtgggcgaaaagttcct 778
| |||||| | ||||||||||||
Sbjct: 41052 aatttccggtgtcgaaaagttcct 41029
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7760
Number of Sequences: 1807
Number of extensions: 7760
Number of successful extensions: 52
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)