BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF01FM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig978 1300 0.0
>3x_Contig978
Length = 3477
Score = 1300 bits (656), Expect = 0.0
Identities = 760/792 (95%), Gaps = 2/792 (0%)
Strand = Plus / Minus
Query: 87 tattagacagagacttagaaacaattaagaaacaaatcaaggggaagaaagttattgtta 146
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2793 tattagacagagacttagaaacaattaagaaacaaatcaaggggaagaaagttattgtta 2734
Query: 147 ttggtggtggtgataccggtaatgattgtttaggtacttctgtcagacatgg-cgctgcg 205
|||||||||||||||||||||||||||||||||||||||||||||||||||| |||||||
Sbjct: 2733 ttggtggtggtgataccggtaatgattgtttaggtacttctgtcagacatgggcgctgcg 2674
Query: 206 tcagttctaaactttgagttgttaccacaaccacctaacgaacgttctaaggacaatcct 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2673 tcagttctaaactttgagttgttaccacaaccacctaacgaacgttctaaggacaatcct 2614
Query: 266 tggcctcaatggccacgtatcatgagaattgattacgggcatgcggaagtgaaagaacat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2613 tggcctcaatggccacgtatcatgagaattgattacgggcatgcggaagtgaaagaacat 2554
Query: 326 tacggaagagatcctcgtgagtactgcatcttatccaaggagtttattggaaatgaaaat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2553 tacggaagagatcctcgtgagtactgcatcttatccaaggagtttattggaaatgaaaat 2494
Query: 386 ggtgaagtgaaagccattaaaaccgttcgtgtcgaatggaagaaatctcaatctggtgtt 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2493 ggtgaagtgaaagccattaaaaccgttcgtgtcgaatggaagaaatctcaatctggtgtt 2434
Query: 446 tggcaaatggtagatgtaccaggttctgaacaaatatttgaagctgacatcgttctatta 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2433 tggcaaatggtagatgtaccaggttctgaacaaatatttgaagctgacatcgttctatta 2374
Query: 506 tccatgggtttcgtcggccctgaagtaatcgaagaccctacctttgtcaaatccaaaaga 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2373 tccatgggtttcgtcggccctgaagtaatcgaagaccctacctttgtcaaatccaaaaga 2314
Query: 566 ggtaccatcactacgttgtcagattcctcgtactctgttgacggagacaaggtatttgca 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2313 ggtaccatcactacgttgtcagattcctcgtactctgttgacggagacaaggtatttgca 2254
Query: 626 gcaggtgactgtaggagaggtcaatctctaatcgtgtgggctatccaagagggaagaaag 685
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2253 gcaggtgactgtaggagaggtcaatctctaatcgtgtgggctatccaagagggaagaaag 2194
Query: 686 tgtgctacagccattgacacatcctttgatgggttcaccaaacttacttgaaaatggtgt 745
|||||||||||||||||||||| | |||||||| || ||||||||| || ||||||||
Sbjct: 2193 tgtgctacagccattgacacattc-ttgatggggtccacaaacttacctggaaatggtgg 2135
Query: 746 atttgtcaaacgtgactacaaacttttggaagaactacccttcacattttaactttttta 805
|||||||||||||||||||||| |||||||||||| ||| |||| ||||| | ||||
Sbjct: 2134 tattgtcaaacgtgactacaaactcttggaagaactagcctccacaatttaaactattta 2075
Query: 806 ttatttttatttcaagttttgtcgacttgtaaagaaacctttttttataaattttcttta 865
||||||||| | | ||| | ||||| |||||||||| || ||||| |||||||||||
Sbjct: 2074 ttatttttaatacgagtatgtacgactagtaaagaaacaattatttattaattttcttta 2015
Query: 866 tttgaaggagat 877
| |||| |||||
Sbjct: 2014 tatgaatgagat 2003
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8862
Number of Sequences: 1807
Number of extensions: 8862
Number of successful extensions: 76
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)