BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF01RM1.SCF screened BAC_end
(924 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1569 1328 0.0
>3x_Contig1569
Length = 11625
Score = 1328 bits (670), Expect = 0.0
Identities = 740/754 (98%), Gaps = 7/754 (0%)
Strand = Plus / Minus
Query: 48 aacatactctgagatccagtggatagtgaattctgttgaaaagtttggcattacaatttc 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9439 aacatactctgagatccagtggatagtgaattctgttgaaaagtttggcattacaatttc 9380
Query: 108 gtgcttctgaatatttgaaccttttcaaatgaatagccaaagtttttggtaaagacttca 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9379 gtgcttctgaatatttgaaccttttcaaatgaatagccaaagtttttggtaaagacttca 9320
Query: 168 atcccacagtacgctcagcttcttgtaagccacaacatttatcgcagtaaaatttattgg 227
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9319 atcccacagtacgctcagcttcttgtaagccacaacatttatcgcagtaaaatttattgg 9260
Query: 228 caccagttaataactcgcgatgtttgtagttgtttaaaatgtcttgaattttgatttctt 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9259 caccagttaataactcgcgatgtttgtagttgtttaaaatgtcttgaattttgatttctt 9200
Query: 288 cgtcttcctgaatctcaataggaaaatctaaaaatggttcatctcttgcagtgatagtat 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9199 cgtcttcctgaatctcaataggaaaatctaaaaatggttcatctcttgcagtgatagtat 9140
Query: 348 cgcaagtaaaacatttagtactattgcataatgaccctttgaacagatcctcgataaatg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9139 cgcaagtaaaacatttagtactattgcataatgaccctttgaacagatcctcgataaatg 9080
Query: 408 tcggttttgattcaagtttatcagtatccagttccatatctctttttaaagtatcactta 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9079 tcggttttgattcaagtttatcagtatccagttccatatctctttttaaagtatcactta 9020
Query: 468 attcgttcaataaataatttaaaaattcatgtgcgtcctgatgcatcgaagaactaaaca 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9019 attcgttcaataaataatttaaaaattcatgtgcgtcctgatgcatcgaagaactaaaca 8960
Query: 528 agatattctcttgtttc-atatattgacaaagttcgaaggagatacaacacctattgctg 586
||||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8959 agatattctcttgtttcaatatattgacaaagttcgaaggagatacaacacctattgctg 8900
Query: 587 attcattttcagcaatacattcgaaaatatcttttagacccgaatacaatgtanggtttt 646
||||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||
Sbjct: 8899 attcattttcagcaatacattcgaaaatatcttttagacccgaatacaatgta-ggtttt 8841
Query: 647 gaacctttcggcagataattcgctaagctggtatcgacgtttacaaccggttccgttgac 706
| ||||||||||||||||| |||||||||||||||||||||||||||||| |||||||||
Sbjct: 8840 gtacctttcggcagataatccgctaagctggtatcgacgtttacaaccgg-tccgttgac 8782
Query: 707 tagcgccggcttttt-ctttgttc-atggagggtgcttttaagtgag-attggaatgtgg 763
|||||||| |||||| |||||||| |||||||||||||||||||| | ||| ||||||||
Sbjct: 8781 tagcgccgcctttttcctttgttcaatggagggtgcttttaagtgtgaatttgaatgtgg 8722
Query: 764 aaccggctgaggcacggcc-gcgcattgggagaa 796
|||||||||||||||||| | ||||||||||||
Sbjct: 8721 taccggctgaggcacggccagtgcattgggagaa 8688
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7684
Number of Sequences: 1807
Number of extensions: 7684
Number of successful extensions: 53
Number of sequences better than 1.0e-20: 1
length of query: 924
length of database: 10,358,551
effective HSP length: 16
effective length of query: 908
effective length of database: 10,329,639
effective search space: 9379312212
effective search space used: 9379312212
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)