BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF02RM1.SCF screened BAC_end
(932 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1717 1223 0.0
>3x_Contig1717
Length = 18389
Score = 1223 bits (617), Expect = 0.0
Identities = 689/709 (97%), Gaps = 3/709 (0%)
Strand = Plus / Minus
Query: 48 agacacgatagaccaatctggttgaggtttcttaccacgacacaagttagataaagtcca 107
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13980 agacacgatagaccaatctggttgaggtttcttaccacgacacaagttagataaagtcca 13921
Query: 108 cgtagctgttctaatcaaggaagtcttgttcaattcgaacaaatatagaattggttgcat 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13920 cgtagctgttctaatcaaggaagtcttgttcaattcgaacaaatatagaattggttgcat 13861
Query: 168 ggcaccacattgcaaaacgtagtctctataatcggtggaatcaccagcaactttacccaa 227
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 13860 ggcaccacattgcaaaacgtagtctctataatcggtggaatcaccagcaacgttacccaa 13801
Query: 228 ggcccaaatagcttgttccttcacttcaaccgagtttgaatataataattgaatgaataa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13800 ggcccaaatagcttgttccttcacttcaaccgagtttgaatataataattgaatgaataa 13741
Query: 288 tggcacagcacccgcatctacgacgactctagtctgctcagaagtaccagaagcaatgtt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13740 tggcacagcacccgcatctacgacgactctagtctgctcagaagtaccagaagcaatgtt 13681
Query: 348 cgtcaacgcccaagcagcttccaattgcaacatctcaggttgattttcgctcatgaattg 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13680 cgtcaacgcccaagcagcttccaattgcaacatctcaggttgattttcgctcatgaattg 13621
Query: 408 gaccaaggttggcactacgccagtactgataaccaaatcgataggtggtctgtgttctct 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13620 gaccaaggttggcactacgccagtactgataaccaaatcgataggtggtctgtgttctct 13561
Query: 468 agacaagacttgtctaaacttgaccgtcacagccaactgttgttgtagatcgttagaatg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 13560 agacaagacttgtctaaacttgaccgtcacagccaactgttgttgtagatcgttagaatg 13501
Query: 528 gatttgttcc-acatagcaagcaactcctgttgtaattgtctgtagaaagaggagtcctg 586
|||||||||| |||||||| ||||||||||||||||||||||||||||||||||||||||
Sbjct: 13500 gatttgttccaacatagcaggcaactcctgttgtaattgtctgtagaaagaggagtcctg 13441
Query: 587 atcgtcatcatcattattttcatcattagaatcgttaccaacaggcgcatttgaaatttc 646
|||||||||||||| ||||||||||| |||||||||||||||||||||| ||||||||||
Sbjct: 13440 atcgtcatcatcatcattttcatcatcagaatcgttaccaacaggcgca-ttgaaatttc 13382
Query: 647 ttctttttggtaatgcctcaatccttttgaactttcttaactggacttgttgaacgtttt 706
||||||||| |||||||||| ||| |||| ||||| |||| |||||||||||||| |
Sbjct: 13381 ttctttttgctaatgcctcatccctcttgacttttctcaactcgacttgttgaacgtctc 13322
Query: 707 tacgaacacgtaatttatcagcaga-aatctacccttattcttgaagtt 754
||||| |||||||| ||||||||| |||||||||||||||||||||||
Sbjct: 13321 tacgacgacgtaattcatcagcagagaatctacccttattcttgaagtt 13273
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 12,651
Number of Sequences: 1807
Number of extensions: 12651
Number of successful extensions: 75
Number of sequences better than 1.0e-20: 1
length of query: 932
length of database: 10,358,551
effective HSP length: 16
effective length of query: 916
effective length of database: 10,329,639
effective search space: 9461949324
effective search space used: 9461949324
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)