BLASTN 2.2.3 [May-13-2002]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= FJ0AC30ZF03FM1.SCF screened BAC_end
         (908 letters)

Database: Klactis 3X assemblage 11/02 
           1807 sequences; 10,358,551 total letters

Searching....done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

3x_Contig1774                                                        1122   0.0  

>3x_Contig1774 
          Length = 27771

 Score = 1122 bits (566), Expect = 0.0
 Identities = 670/698 (95%), Gaps = 5/698 (0%)
 Strand = Plus / Minus

                                                                         
Query: 91    atcttgcctt-aatatacttgtccatcttccagtttgacaattatgttttaatgttagtt 149
             |||||||||| |||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24204 atcttgccttcaatatacttgtccatcttccagtttgacaattatgttttaatgttagtt 24145

                                                                         
Query: 150   ttggttgaagatcttccggaagtgttccactgacatcaaataatctaattgtgtcatcgt 209
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24144 ttggttgaagatcttccggaagtgttccactgacatcaaataatctaattgtgtcatcgt 24085

                                                                         
Query: 210   atccattgctttctaatgtttcatccatcggagaatatgatactgcggagacacttaatc 269
             |||||||||   ||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24084 atccattgcaaactaatgtttcatccatcggagaatatgatactgcggagacacttaatc 24025

                                                                         
Query: 270   tagaatcatatgtagcaacaatttcatgggatgcgaagtcttcgtattgtgaccactctg 329
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24024 tagaatcatatgtagcaacaatttcatgggatgcgaagtcttcgtattgtgaccactctg 23965

                                                                         
Query: 330   gtttattgacaatttttcttgtatcccatattttaagtgttctatctaatgatccggtcg 389
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23964 gtttattgacaatttttcttgtatcccatattttaagtgttctatctaatgatccggtcg 23905

                                                                         
Query: 390   ctatttcatagggccgcttagggtttatgctgaaggaaccgatttttttgtctgacaatc 449
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23904 ctatttcatagggccgcttagggtttatgctgaaggaaccgatttttttgtctgacaatc 23845

                                                                         
Query: 450   ttttcaaattaatttctgttggtttggtacgaacgtcaaacgtagtgaattcgccgctca 509
             ||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23844 ttttcaaattaatttctgttggtttggtacgaacgtcaaacgtagtgaattcgccgctca 23785

                                                                         
Query: 510   atgtcgtcatgatttaggacgttcggatcattatagttgaattgaaaatcacttatccct 569
             ||||||||||||  || |||||||||||||||||||||||||||||||||||||||||||
Sbjct: 23784 atgtcgtcatga-ataagacgttcggatcattatagttgaattgaaaatcacttatccct 23726

                                                                         
Query: 570   aatggatcatcatactcattcttttacactagtatttcttcactgttcatattttgtaga 629
             |||||||||||||||||||||||| ||||||||||||||||||||||||||| |||||||
Sbjct: 23725 aatggatcatcatactcattctttaacactagtatttcttcactgttcatatcttgtaga 23666

                                                                         
Query: 630   ttaattgatctt-aatatccatcgtatgaagctgctagtaacctacttgtattcgtggcg 688
             |||||||||||| |||||||||||||||| |||||||||||||||||  ||| |||||||
Sbjct: 23665 ttaattgatcttaaatatccatcgtatgaggctgctagtaacctactgctatccgtggcg 23606

                                                                         
Query: 689   tatgttgtaaattcttccttccttttttggtaataatttcactttaataatatcaggctc 748
             |||| ||| |||||||||| | ||||| |  ||||||||||||||| |||||||||||||
Sbjct: 23605 tatg-tgtcaattcttcctacatttttggtaaataatttcactttagtaatatcaggctc 23547

                                                   
Query: 749   ct-ttattcatcctcagggtgaattttacgaactttcc 785
             || | ||||||||||||| ||| ||| |||||| ||||
Sbjct: 23546 ctctaattcatcctcaggttgagtttcacgaacgttcc 23509


  Database: Klactis 3X assemblage 11/02
    Posted date:  Nov 27, 2002 12:23 PM
  Number of letters in database: 10,358,551
  Number of sequences in database:  1807
  
Lambda     K      H
    1.37    0.711     1.31 

Gapped
Lambda     K      H
    1.37    0.711     1.31 


Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7148
Number of Sequences: 1807
Number of extensions: 7148
Number of successful extensions: 39
Number of sequences better than 1.0e-20: 1
length of query: 908
length of database: 10,358,551
effective HSP length: 16
effective length of query: 892
effective length of database: 10,329,639
effective search space: 9214037988
effective search space used: 9214037988
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)