BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF03RM1.SCF screened BAC_end
(920 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1659 1300 0.0
>3x_Contig1659
Length = 17570
Score = 1300 bits (656), Expect = 0.0
Identities = 768/792 (96%), Gaps = 10/792 (1%)
Strand = Plus / Plus
Query: 48 ctgcaaagcacgtgcctctcaaagagattccgcaccttttcaagcctctcatcttcttag 107
||||||||||||||| ||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9120 ctgcaaagcacgtgc-tctcaaagagattccgcaccttttcaagcctctcatcttcttag 9178
Query: 108 aatatatgctggcttattgctgctgctgttgccttactaaaatgtgtcaatagaagcctc 167
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9179 aatatatgctggcttattgctgctgctgttgccttactaaaatgtgtcaatagaagcctc 9238
Query: 168 tcaatgtatgtttcgctacttgaagctagaatttaaaggttttttccatgattgttgagt 227
||||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||
Sbjct: 9239 tcaatgtatgtttcgctacttgaagctagaatttaaaggttttttccatgagtgttgagt 9298
Query: 228 ctcgacaggtttctgcagcgacagaaaataaaattatctgtcacgtgaataagcacttaa 287
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9299 ctcgacaggtttctgcagcgacagaaaataaaattatctgtcacgtgaataagcacttaa 9358
Query: 288 ttcccatccatacataagtagataaatatatatatcgggatgattaaaacacgtactctt 347
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9359 ttcccatccatacataagtagataaatatatatatcgggatgattaaaacacgtactctt 9418
Query: 348 tgatttctagagtgttatggttgtctctgataagaattaaaaccctagtagaatccagcc 407
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9419 tgatttctagagtgttatggttgtctctgataagaattaaaaccctagtagaatccagcc 9478
Query: 408 catatgtattgtatttgtggaaaatgacgttggcgatggatcgctttctgatgtagcatt 467
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9479 catatgtattgtatttgtggaaaatgacgttggcgatggatcgctttctgatgtagcatt 9538
Query: 468 tttctaaagggaaaagcacggtttcctcacgattgtatggtaaaatatcaagtatctctg 527
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9539 tttctaaagggaaaagcacggtttcctcacgattgtatggtaaaatatcaagtatctctg 9598
Query: 528 cataccccgcccaattccaattgagattcactggaaacttcaagttttggtgtgttcaaa 587
|||||||||||||||||||||||||||||||||||||||||||| |||||||||||||||
Sbjct: 9599 cataccccgcccaattccaattgagattcactggaaacttcaag-tttggtgtgttcaaa 9657
Query: 588 gagaacatatcgacttctgtttctaatcgcttcccgtatagggcgcaatgcaattcctca 647
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 9658 gagaacatatcgacttctgtttctaatcgcttcccgtatagggcgcaatgcaattcctca 9717
Query: 648 tttcttattatagagnagtatttcccttgttctttggataagnttggagtacctgctttt 707
||||||||||||||| ||||||| |||||||| ||||||||| ||||||||||||| |||
Sbjct: 9718 tttcttattatagag-agtattt-ccttgttc-ttggataag-ttggagtacctgc-ttt 9772
Query: 708 gaaattttgccattattttacctctatgaatcagccaaataagtttttgaaaagggttat 767
|||||| ||||| |||||||||||||||| ||||| |||||||||| || ||| || |||
Sbjct: 9773 gaaattctgccaatattttacctctatgattcagcaaaataagtttctg-aaatggatat 9831
Query: 768 ttccccatttgacaagagtaaatttgatttgggctcatttgctggttcaagtatttgaaa 827
|| |||| ||||||||||||||| ||||| ||||||||||||| |||| |||| ||||||
Sbjct: 9832 tt-cccaattgacaagagtaaatctgattcgggctcatttgct-gttcgagtaattgaaa 9889
Query: 828 ttttaggcccat 839
|| |||||||||
Sbjct: 9890 ttataggcccat 9901
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8259
Number of Sequences: 1807
Number of extensions: 8259
Number of successful extensions: 77
Number of sequences better than 1.0e-20: 1
length of query: 920
length of database: 10,358,551
effective HSP length: 16
effective length of query: 904
effective length of database: 10,329,639
effective search space: 9337993656
effective search space used: 9337993656
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)