BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF04FM1.SCF screened BAC_end
(973 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1210 1156 0.0
>3x_Contig1210
Length = 6392
Score = 1156 bits (583), Expect = 0.0
Identities = 649/659 (98%), Gaps = 9/659 (1%)
Strand = Plus / Plus
Query: 86 attacttattgagtttctccatgtacatatgtaaactacaaatatgtatgaagatgacaa 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5469 attacttattgagtttctccatgtacatatgtaaactacaaatatgtatgaagatgacaa 5528
Query: 146 cctgtatataaaagactaatcaaacactatacgttaatttacatctttctatcaagagac 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5529 cctgtatataaaagactaatcaaacactatacgttaatttacatctttctatcaagagac 5588
Query: 206 ctggcttgtattctcctattcgttattttgttgatgttacccatgtccacattaattctc 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5589 ctggcttgtattctcctattcgttattttgttgatgttacccatgtccacattaattctc 5648
Query: 266 aagaaaatcttgtcaatattttaaaacctgaaaaatcccaatttgataaataaaggtcat 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5649 aagaaaatcttgtcaatattttaaaacctgaaaaatcccaatttgataaataaaggtcat 5708
Query: 326 atatacattaattatcacattaaggttgatagaactttccgtcgtagcaaagatacaaat 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5709 atatacattaattatcacattaaggttgatagaactttccgtcgtagcaaagatacaaat 5768
Query: 386 aaaggctcaacattgctttcctgcatatgacactatgggtgtacaagtatctcctttgac 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5769 aaaggctcaacattgctttcctgcatatgacactatgggtgtacaagtatctcctttgac 5828
Query: 446 taagatcatttgccttagtggcgtactagcattaggcttt-cttttgattatattga-gt 503
||||||||||||||||| |||||||||||||||||||||| |||||||||||||||| ||
Sbjct: 5829 taagatcatttgccttattggcgtactagcattaggctttgcttttgattatattgatgt 5888
Query: 504 tgcgcacttttccacaactattatccattgtttgacgtgttaatattcctactcgctcca 563
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5889 tgcgcacttttccacaactattatccattgtttgacgtgttaatattcctactcgctcca 5948
Query: 564 ttgcctaatgcattgtttggaaagagcgatgggttttcatcacatggcgaattcttgaat 623
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 5949 ttgcctaatgcattgtttggaaagagcgatgggttttcatcacatggcgaattcttgaat 6008
Query: 624 gaatctggcagaaacggcgaggattttcggtcatttttatgacccggtttgctagtatct 683
||||||||||||||||||||||| ||||||||| |||||||| |||||||||||||||||
Sbjct: 6009 gaatctggcagaaacggcgagga-tttcggtca-ttttatga-ccggtttgctagtatct 6065
Query: 684 agtggaaattttatttgccaattgtgttctaccacttcaaactttgattaaccacgaaa 742
||||| ||||||| ||||||||||||||||||||| |||||| ||||||||||||||||
Sbjct: 6066 agtgg-aatttta-ttgccaattgtgttctaccac-tcaaac-ttgattaaccacgaaa 6120
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7579
Number of Sequences: 1807
Number of extensions: 7579
Number of successful extensions: 56
Number of sequences better than 1.0e-20: 1
length of query: 973
length of database: 10,358,551
effective HSP length: 16
effective length of query: 957
effective length of database: 10,329,639
effective search space: 9885464523
effective search space used: 9885464523
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)