BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF04RM1.SCF screened BAC_end
(940 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1009 1354 0.0
>3x_Contig1009
Length = 4650
Score = 1354 bits (683), Expect = 0.0
Identities = 739/750 (98%), Gaps = 6/750 (0%)
Strand = Plus / Minus
Query: 47 tctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtttgagt 106
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1600 tctcttgaatatcgtactggcaatcatctcgtaataggtgtatatgtatatagtttgagt 1541
Query: 107 tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 166
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1540 tttatgtttgtgtttaacctcgtgacaatacacatacatatatttaaatcctaatataaa 1481
Query: 167 atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 226
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1480 atatactctatcacaagaaccgaatcttcaactattcacatttcatacttcttatatata 1421
Query: 227 aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 286
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1420 aaactagaaccgaaaaccatcttagtgtaacgatactaacactctgtgtgcatattaatc 1361
Query: 287 tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 346
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1360 tcgggctaaacgaagcataaaaaagtcaaaccaaaaacagttaaaatgctaaagataacg 1301
Query: 347 aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 406
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1300 aggtaactgtcagaaagtcagtctgagacagctgttctaacctgatttccagttttaagg 1241
Query: 407 tacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaattttt 466
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1240 tacattacagtacaatgcagatactcagctaggcgaattttttttattttgagaattttt 1181
Query: 467 tgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcgaaat 526
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1180 tgttggctttttcttttgcatcttagaaacgtgtgtaggactgagagttttgtgcgaaat 1121
Query: 527 cttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtcattgtga 586
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1120 cttgagtgtgtggactgagaaacggtgaaataaatgtggtctgactaagtgtcattgtga 1061
Query: 587 acgacgccgacacatanggctgtgcc-ggggcctgtacccttttccacacagtagtaata 645
|||||||||||||||| ||||||||| |||||||||||||||||||||||||||||||||
Sbjct: 1060 acgacgccgacacatagggctgtgccgggggcctgtacccttttccacacagtagtaata 1001
Query: 646 ataataaacattagcttcggtgatgtttaacggcataaactgtaaactattggtatgccg 705
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1000 ataataaacattagcttcggtgatgtttaacggcataaactgtaaactattggtatgcc- 942
Query: 706 ggtccgtatggtagggcattttttgcaacaccttaaactggggaagaagctaaattgatt 765
||||||||| |||| ||| ||||||||||| | |||||| |||||| |||||||||||||
Sbjct: 941 ggtccgtat-gtagtgca-tttttgcaaca-cgtaaact-gggaaggagctaaattgatt 886
Query: 766 ttttaaattgatttctcaaattttagggtg 795
||||||||||||||||||||||| ||||||
Sbjct: 885 ttttaaattgatttctcaaatttaagggtg 856
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7616
Number of Sequences: 1807
Number of extensions: 7616
Number of successful extensions: 57
Number of sequences better than 1.0e-20: 1
length of query: 940
length of database: 10,358,551
effective HSP length: 16
effective length of query: 924
effective length of database: 10,329,639
effective search space: 9544586436
effective search space used: 9544586436
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)