BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF05FM1.SCF screened BAC_end
(939 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig858 1380 0.0
>3x_Contig858
Length = 3029
Score = 1380 bits (696), Expect = 0.0
Identities = 822/855 (96%), Gaps = 7/855 (0%)
Strand = Plus / Minus
Query: 86 atcaaaaggataaaccctccgatgaactacttgaaagttaatgtaaatgcagtcattccc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1264 atcaaaaggataaaccctccgatgaactacttgaaagttaatgtaaatgcagtcattccc 1205
Query: 146 tcttattctcatacccgaagctactgtcttggtttttcaatgaacttcatatgaagttga 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1204 tcttattctcatacccgaagctactgtcttggtttttcaatgaacttcatatgaagttga 1145
Query: 206 gtatatagataaccataaaatcttttagaattaacaactatagctgctaaagttgtccac 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1144 gtatatagataaccataaaatcttttagaattaacaactatagctgctaaagttgtccac 1085
Query: 266 aattactactgtaatattatcattgtcatgtgtaaaactcaacttgtttgtgatttacaa 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 aattactactgtaatattatcattgtcatgtgtaaaactcaacttgtttgtgatttacaa 1025
Query: 326 taaaaatctcgttagtttgaaagggtgacatttactcatttcataattaactaactcgga 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 taaaaatctcgttagtttgaaagggtgacatttactcatttcataattaactaactcgga 965
Query: 386 agagagagctttcgagaaatagagctaaatctttgaagcatgtaataaactgccatattc 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 agagagagctttcgagaaatagagctaaatctttgaagcatgtaataaactgccatattc 905
Query: 446 ggtttaatcagccaaatcctgtaccaactgtatattccccccatcaaaaaaagagagatt 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ggtttaatcagccaaatcctgtaccaactgtatattccccccatcaaaaaaagagagatt 845
Query: 506 ctggcgaatgtttatttgagttctttctttttagcatattatgaaaattttctgaacttg 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 ctggcgaatgtttatttgagttctttctttttagcatattatgaaaattttctgaacttg 785
Query: 566 aaaaagaagcgatgagatgagatgagcttatacagtagtaactgcactatgggtagcatt 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 aaaaagaagcgatgagatgagatgagcttatacagtagtaactgcactatgggtagcatt 725
Query: 626 aaattacaacatatacattcttattctctctcgtaggacaatacagcactacagatatgg 685
|||| |||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 aaataacaacatatacattcttattctctctcgtaggacaatacagcactacagatatgg 665
Query: 686 cagccacgttgaaaaagttgaaccagcgtcaattggaatcttaagagtcgaaaggattct 745
||||||||| ||||||||||||| ||||||||||||||||| | |||||| |||||||||
Sbjct: 664 cagccacgtcgaaaaagttgaacaagcgtcaattggaatctaaggagtcg-aaggattct 606
Query: 746 ggtaanattgttaaaagagcttataactatagtgttgattcttggcgatgaagattctga 805
||||| ||||| ||||||||| | ||| |||||||||||| ||||||||||||||||||
Sbjct: 605 ggtaaaattgtaaaaagagctaaaaacattagtgttgattc-tggcgatgaagattctga 547
Query: 806 tgatgtccttccac-gtttattttcagaagatgagcttgattgatgaatttgatgatgct 864
|||||||| ||||| |||||| ||||||||||||||| || ||||||||| |||||||||
Sbjct: 546 tgatgtcc-tccacggtttatcttcagaagatgagctaga-tgatgaattagatgatgct 489
Query: 865 agcttcaattcaaattcagacaaacttaaacacgaattttgatcaactggatgaatattg 924
|||| |||||| |||||||| | || | ||||| | ||||||||||||||||| ||
Sbjct: 488 agctcaaattcagattcagacgagctagacaacgaa-tctgatcaactggatgaat-ctg 431
Query: 925 aggaggatcaagaag 939
| |||||||||||||
Sbjct: 430 atgaggatcaagaag 416
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 8792
Number of Sequences: 1807
Number of extensions: 8792
Number of successful extensions: 324
Number of sequences better than 1.0e-20: 1
length of query: 939
length of database: 10,358,551
effective HSP length: 16
effective length of query: 923
effective length of database: 10,329,639
effective search space: 9534256797
effective search space used: 9534256797
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)