BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF05RM1.SCF screened BAC_end
(931 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1780 1156 0.0
>3x_Contig1780
Length = 27883
Score = 1156 bits (583), Expect = 0.0
Identities = 643/658 (97%), Gaps = 4/658 (0%)
Strand = Plus / Minus
Query: 47 aaattttaaatctttattgggtaagaca-gggctttccgccctataatattctgaaatag 105
|||||||||||||||||||||||||||| |||||||||||||||||||||||||||||||
Sbjct: 25106 aaattttaaatctttattgggtaagacaagggctttccgccctataatattctgaaatag 25047
Query: 106 gtctgaggagatatctcatccctataccgaaaaagaaaacgttcactcagtctggcttag 165
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 25046 gtctgaggagatatctcatccctataccgaaaaagaaaacgttcactcagtctggcttag 24987
Query: 166 agtgataacctttatttttttttcggcttcaggtgtgtcttaagatattcgtcctatcga 225
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24986 agtgataacctttatttttttttcggcttcaggtgtgtcttaagatattcgtcctatcga 24927
Query: 226 gccttgggttagggttgtgtaaaatttgtatatgctcttaaaatccggatctaggatcta 285
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24926 gccttgggttagggttgtgtaaaatttgtatatgctcttaaaatccggatctaggatcta 24867
Query: 286 taattatctgctgttacaccccctcctatagtaaaagcaaccgatggcatctgaccgaaa 345
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24866 taattatctgctgttacaccccctcctatagtaaaagcaaccgatggcatctgaccgaaa 24807
Query: 346 gaatgtgttttttttcttttcactgtgtgcttcctccataattgctatttgcttgtggcc 405
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24806 gaatgtgttttttttcttttcactgtgtgcttcctccataattgctatttgcttgtggcc 24747
Query: 406 cttgcttgggcaattggcaaaccacgcgtataccctattctaatcttcttcattttctga 465
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24746 cttgcttgggcaattggcaaaccacgcgtataccctattctaatcttcttcattttctga 24687
Query: 466 tccgctggtgaaggctcagttccttttttttttttctcgatcactctcttgggaactggt 525
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 24686 tccgctggtgaaggctcagttccttttttttttttctcgatcactctcttgggaactggt 24627
Query: 526 gtgcattttctttttagtggtggtatttttatactacgactgctttttgcattggtatat 585
||||||||||||||||||||||||||||| ||||||||||||||| ||||||||||||||
Sbjct: 24626 gtgcattttctttttagtggtggtattttaatactacgactgcttcttgcattggtatat 24567
Query: 586 acttttttattatcgggcctatgtgctttgtttgt-atggtgctgccctgttacatattt 644
|||||||||||||||||||||||||| |||| ||| ||||||||||||||||||||||||
Sbjct: 24566 acttttttattatcgggcctatgtgc-ttgtatgtcatggtgctgccctgttacatattt 24508
Query: 645 tcttctttttggccttctncttcaattttccactgccgtttttatttacttccataca 702
||||||| ||| ||||| |||| || ||||||||||||||||| | ||| |||||||
Sbjct: 24507 tcttcttcttgttcttcttcttc-atcttccactgccgtttttactcactcccataca 24451
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 16,156
Number of Sequences: 1807
Number of extensions: 16156
Number of successful extensions: 140
Number of sequences better than 1.0e-20: 1
length of query: 931
length of database: 10,358,551
effective HSP length: 16
effective length of query: 915
effective length of database: 10,329,639
effective search space: 9451619685
effective search space used: 9451619685
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)