BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF06RM1.SCF screened BAC_end
(892 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1343 1338 0.0
>3x_Contig1343
Length = 6877
Score = 1338 bits (675), Expect = 0.0
Identities = 788/820 (96%), Gaps = 5/820 (0%)
Strand = Plus / Minus
Query: 61 aggtcttgtctggttctccaggttacattaacttgttggatgctttgaactcttggccat 120
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1084 aggtcttgtctggttctccaggttacattaacttgttggatgctttgaactcttggccat 1025
Query: 121 tggttaaggaattgtctgcatctctaaacttgccagctgctgcctctttcaagcacgttt 180
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1024 tggttaaggaattgtctgcatctctaaacttgccagctgctgcctctttcaagcacgttt 965
Query: 181 ccccagccggtgcagccgttggtttgccattatccgacgtcgaaaaacaaatctactttg 240
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 964 ccccagccggtgcagccgttggtttgccattatccgacgtcgaaaaacaaatctactttg 905
Query: 241 ttgctgatattgagaacttatctcccttggcttgtgcttatgcaagagcccgtggtgccg 300
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 904 ttgctgatattgagaacttatctcccttggcttgtgcttatgcaagagcccgtggtgccg 845
Query: 301 acagaatgtcctctttcggtgactggattgccttgtccaacatcgttgacgtcccaactg 360
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 844 acagaatgtcctctttcggtgactggattgccttgtccaacatcgttgacgtcccaactg 785
Query: 361 ccaagatcatttctcgtgaagtctctgatggtgttattgctccagggtttgaaccagaag 420
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 784 ccaagatcatttctcgtgaagtctctgatggtgttattgctccagggtttgaaccagaag 725
Query: 421 ctctagaaattttgaagaagaagaagaatggtaagtactgtattttacaaattgatccaa 480
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 724 ctctagaaattttgaagaagaagaagaatggtaagtactgtattttacaaattgatccaa 665
Query: 481 actacactccagaagcattggaatccagacaagtctacggtgtcactctacagcaaaaga 540
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 664 actacactccagaagcattggaatccagacaagtctacggtgtcactctacagcaaaaga 605
Query: 541 gaaatgatgctattataaataaatcttccttcanagagatcgtttctcaaaacaaggact 600
||||||||||||||||||||||||||||||||| ||||||||||||||||||||||||||
Sbjct: 604 gaaatgatgctattataaataaatcttccttcaaagagatcgtttctcaaaacaaggact 545
Query: 601 tgccagaacaagcagttattgatttgaccgttgccacgatcgctcttaagtacacccaaa 660
|||||||||||||||||||||||||||||||||||||||||||||| ||||||||||||
Sbjct: 544 tgccagaacaagcagttattgatttgaccgttgccacgatcgctctaaagtacacccaat 485
Query: 661 tcaactctgtttgctacgcnaagacggttatggttgttggtttgggtgctggtcaacaat 720
|||||||||||||||||| |||| | ||||||||||||||||||||||||||||||||
Sbjct: 484 ccaactctgtttgctacgcaaagaacggtatggttgttggtttgggtgctggtcaacaat 425
Query: 721 caagaattcactgtacttaaattggccggtgacaaggcanacaattggtggtttaagaca 780
||||||| |||||||| || |||||| |||||||||||| ||||||||||| ||||||||
Sbjct: 424 caagaatccactgtac-tagattggcaggtgacaaggcagacaattggtgg-ttaagaca 367
Query: 781 ccacccaagattccttagtttc-agtgggcccagggttgtaaaaaaaccataaaagccca 839
||||||||| |||| ||||| |||||||| |||| ||| || | |||| ||||| |||
Sbjct: 366 acacccaagagtcctaggtttcaagtgggccaaggg-tgtcaagagaccagaaaagtcca 308
Query: 840 tggcctttggtttatttcggcactggtcaaattccaactg 879
||| ||| |||| |||| ||||||||||||||||||||
Sbjct: 307 atgccattgattta-ttcgtcactggtcaaattccaactg 269
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7427
Number of Sequences: 1807
Number of extensions: 7427
Number of successful extensions: 252
Number of sequences better than 1.0e-20: 1
length of query: 892
length of database: 10,358,551
effective HSP length: 16
effective length of query: 876
effective length of database: 10,329,639
effective search space: 9048763764
effective search space used: 9048763764
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)