BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF07RM1.SCF screened BAC_end
(948 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1645 1346 0.0
>3x_Contig1645
Length = 12736
Score = 1346 bits (679), Expect = 0.0
Identities = 766/786 (97%), Gaps = 7/786 (0%)
Strand = Plus / Plus
Query: 49 tatcctacttgattgagcataaatctgatttcgaaggtgtgttagaaggtgtattccact 108
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7855 tatcctacttgattgagcataaatctgatttcgaaggtgtgttagaaggtgtattccact 7914
Query: 109 cctcgttacagactgaacctttcgttaaggaacaattaaagggtggttacggaccagtgt 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7915 cctcgttacagactgaacctttcgttaaggaacaattaaagggtggttacggaccagtgt 7974
Query: 169 tcgcagtcactttaaattcaaaggaacaatgtaggaaattccctcaattattgacgtgct 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 7975 tcgcagtcactttaaattcaaaggaacaatgtaggaaattccctcaattattgacgtgct 8034
Query: 229 tccagcatgctacctccttaggtggtgttgaatctctcgttgaatggagagccttgacag 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8035 tccagcatgctacctccttaggtggtgttgaatctctcgttgaatggagagccttgacag 8094
Query: 289 atccctacatcatccccaccttgatcagagtttctgttggtgtggaaaatgttgatgatt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8095 atccctacatcatccccaccttgatcagagtttctgttggtgtggaaaatgttgatgatt 8154
Query: 349 tgattaaggatttcgctaacgctttgaagactttgcaaggagcaaagaattgagtcctct 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8155 tgattaaggatttcgctaacgctttgaagactttgcaaggagcaaagaattgagtcctct 8214
Query: 409 caggttatactagcgtttgtgtcaccttttagagtatattgtatatatttgaacaataaa 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8215 caggttatactagcgtttgtgtcaccttttagagtatattgtatatatttgaacaataaa 8274
Query: 469 aatgcatttgatactcgtctttacctgatctgttggtgcggtttcaatatccaatctttg 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8275 aatgcatttgatactcgtctttacctgatctgttggtgcggtttcaatatccaatctttg 8334
Query: 529 tatattatttacgttaccctaattattgatttcgaacaatcatcggaaacatcataaacc 588
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 8335 tatattatttacgttaccctaattattgatttcgaacaatcatcggaaacatcataaacc 8394
Query: 589 tgtaaaattggaaagaatatgtaaancatgacagaataaacaaacaacacttacaaggtt 648
||||||||||||||||||||||||| ||||||||||||||||||||||| ||||||||
Sbjct: 8395 tgtaaaattggaaagaatatgtaaacaatgacagaataaacaaacaacac-tacaaggta 8453
Query: 649 ttgattcacaagtcactgtcgcactatttagaagatcatatcattttttgctgaatttaa 708
|||||||||||||||||||||||||||| ||| ||||||||| ||||||||||||||||
Sbjct: 8454 ttgattcacaagtcactgtcgcactattaagagaatcatatca-tttttgctgaatttaa 8512
Query: 709 ttacaatttggcaatcaacgaagctgcttccgcattgcctacgagttaacaaaaacctta 768
||||||||||||||||||||||||||| || ||| ||||||||||| |||||||||| ||
Sbjct: 8513 ttacaatttggcaatcaacgaagctgc-tcggcaatgcctacgagtaaacaaaaacc-ta 8570
Query: 769 agacgacccaaagcgtcaaaaaccaccagaaaagaagccattattgacagaaaggtgtta 828
|||||| |||||||||||||| ||||||| |||||||||| || |||||| ||||||| |
Sbjct: 8571 agacga-ccaaagcgtcaaaacccaccag-aaagaagccaatagtgacag-aaggtgtaa 8627
Query: 829 gcgtgg 834
||||||
Sbjct: 8628 gcgtgg 8633
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 7783
Number of Sequences: 1807
Number of extensions: 7783
Number of successful extensions: 48
Number of sequences better than 1.0e-20: 1
length of query: 948
length of database: 10,358,551
effective HSP length: 16
effective length of query: 932
effective length of database: 10,329,639
effective search space: 9627223548
effective search space used: 9627223548
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)