BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF08FM1.SCF screened BAC_end
(936 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1422 1332 0.0
>3x_Contig1422
Length = 9570
Score = 1332 bits (672), Expect = 0.0
Identities = 751/768 (97%), Gaps = 7/768 (0%)
Strand = Plus / Minus
Query: 86 atggacagcagcctcaaggagcctaccagggctacaaccctcaacaagctcaaggctacc 145
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6959 atggacagcagcctcaaggagcctaccagggctacaaccctcaacaagctcaaggctacc 6900
Query: 146 aaccttaccagggctacaatgctcagcaacaaggttacaacgctcagcaaggcggtcaca 205
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6899 aaccttaccagggctacaatgctcagcaacaaggttacaacgctcagcaaggcggtcaca 6840
Query: 206 acaataactacaataaaaattataataataaaaacagttacaataactataataagcagg 265
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6839 acaataactacaataaaaattataataataaaaacagttacaataactataataagcagg 6780
Query: 266 gttatcaaggtgctcaaggatataatgcacaacagccaaccggttacgctgctccagcac 325
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6779 gttatcaaggtgctcaaggatataatgcacaacagccaaccggttacgctgctccagcac 6720
Query: 326 agtcttcatcccagggtatgactttgaaagatttccaaaaccaacaaggcagtactaatg 385
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6719 agtcttcatcccagggtatgactttgaaagatttccaaaaccaacaaggcagtactaatg 6660
Query: 386 cagccaagccaaagcctaagttaaagttggcctctagctctggtattaagttagtaggtg 445
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6659 cagccaagccaaagcctaagttaaagttggcctctagctctggtattaagttagtaggtg 6600
Query: 446 ccaagaaacctgtagcacccaaaactgagaaaactgatgaatccaaggaagcaactaaaa 505
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6599 ccaagaaacctgtagcacccaaaactgagaaaactgatgaatccaaggaagcaactaaaa 6540
Query: 506 ctaccgacgacaacgaagaagcacaatctgaattgcccaaaattgatgatttgaaaatct 565
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6539 ctaccgacgacaacgaagaagcacaatctgaattgcccaaaattgatgatttgaaaatct 6480
Query: 566 cagaggctgaaaaaccaaaaactaaggagaataccccatctgctgatgatacttcctcag 625
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 6479 cagaggctgaaaaaccaaaaactaaggagaataccccatctgctgatgatacttcctcag 6420
Query: 626 agaagactaccagcgctaaggcagacacatctacaggaggagcgaacttcgtggatgctc 685
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 6419 agaagactaccagcgctaaggcagacacatctacaggaggagcgaactccgtggatgctc 6360
Query: 686 taatcaagg-acaagaagatgaggttgacgaaaaagtcgtt-aagatatgtttggtgg-a 742
||||||||| |||||||||||||||||||||| |||||||| |||||||||||||||| |
Sbjct: 6359 taatcaaggaacaagaagatgaggttgacgaagaagtcgttaaagatatgtttggtggta 6300
Query: 743 aggatcaatgttccatcattttcatgggtcaacgtcgatgcttgtaagtccacaatgggg 802
||||||| |||||||||||||||||||| ||||||||||| ||||||| ||||| |||
Sbjct: 6299 aggatcatgtttccatcattttcatgggtc-acgtcgatgctggtaagtcaacaat-ggg 6242
Query: 803 tgggaacttgttatatctgaactggttttgtggaaaaaaagaaccgtt 850
||| ||||||||||||||| ||||||| ||||| | ||||||||||||
Sbjct: 6241 tggtaacttgttatatctg-actggttctgtgg-ataaaagaaccgtt 6196
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 11,595
Number of Sequences: 1807
Number of extensions: 11595
Number of successful extensions: 93
Number of sequences better than 1.0e-20: 1
length of query: 936
length of database: 10,358,551
effective HSP length: 16
effective length of query: 920
effective length of database: 10,329,639
effective search space: 9503267880
effective search space used: 9503267880
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)