BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF08RM1.SCF screened BAC_end
(961 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1579 1225 0.0
>3x_Contig1579
Length = 11264
Score = 1225 bits (618), Expect = 0.0
Identities = 676/690 (97%), Gaps = 4/690 (0%)
Strand = Plus / Plus
Query: 49 gttgttccctctgtagcctatcgaaaaactctgaagattccaaatcttctggaagtgcat 108
|||||||||||||||||| |||||||||||||||||||||||||||||||||||||||||
Sbjct: 2789 gttgttccctctgtagccaatcgaaaaactctgaagattccaaatcttctggaagtgcat 2848
Query: 109 ccactgtatctgtcactgtgattttaaagtcatgagaaagtgtaggagtttggatacaag 168
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2849 ccactgtatctgtcactgtgattttaaagtcatgagaaagtgtaggagtttggatacaag 2908
Query: 169 ctgaattatccgaataagtgtggatgcatctgacggtcgaagtatcagcgttgttatttt 228
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2909 ctgaattatccgaataagtgtggatgcatctgacggtcgaagtatcagcgttgttatttt 2968
Query: 229 catccaaggtgaaccaaacttccaaaggagaaacattaaccttgtgagaaacgtccgcta 288
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 2969 catccaaggtgaaccaaacttccaaaggagaaacattaaccttgtgagaaacgtccgcta 3028
Query: 289 agttgggaacaaatttcatttgaaccaaatatagatgctgatcaactgagaataaatcgt 348
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3029 agttgggaacaaatttcatttgaaccaaatatagatgctgatcaactgagaataaatcgt 3088
Query: 349 cctccacataaccgtctttatcccataaaggtagtcgaagaactttaggaaccacttccg 408
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3089 cctccacataaccgtctttatcccataaaggtagtcgaagaactttaggaaccacttccg 3148
Query: 409 gaatcttggattgaaacaaaattttgttttgagcattttcaaggatgtgaccaaaagcta 468
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3149 gaatcttggattgaaacaaaattttgttttgagcattttcaaggatgtgaccaaaagcta 3208
Query: 469 tacttaatgatttcgtttcagtgaaagcgagaggtttcgcacattttgttttattgattt 528
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 3209 tacttaatgatttcgtttcagtgaaagcgagaggtttcgcacattttgttttattgattt 3268
Query: 529 ctaagatatcccagatcttgtcgatctttttcgaaagatcgatcttggtgtctttaattt 588
|||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3269 ctaagatatcccagatcttgtcgatcttttccgaaagatcgatcttggtgtctttaattt 3328
Query: 589 cttgattgatggcaacaggctgctgaattttgtgccacgactgttttcttgctacccaa- 647
||||||||||||||||||||||||||||| |||||||||||||||||||||||||||||
Sbjct: 3329 cttgattgatggcaacaggctgctgaattctgtgccacgactgttttcttgctacccaat 3388
Query: 648 tgatccattcgtaattagttaatgggtactggttcgtttttttctccttctttctaaggt 707
|||||||||||||||||||||||||||||| |||| ||||||||||| | | ||||||
Sbjct: 3389 tgatccattcgtaattagttaatgggtact-gttcagttttttctcctccatcataaggt 3447
Query: 708 actaatatttctcgtagtttggagggttat 737
|||||||| || |||||||| |||||||||
Sbjct: 3448 actaatatctc-cgtagttt-gagggttat 3475
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 14,905
Number of Sequences: 1807
Number of extensions: 14905
Number of successful extensions: 119
Number of sequences better than 1.0e-20: 1
length of query: 961
length of database: 10,358,551
effective HSP length: 16
effective length of query: 945
effective length of database: 10,329,639
effective search space: 9761508855
effective search space used: 9761508855
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 51 (101.6 bits)