BLASTN 2.2.3 [May-13-2002]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= FJ0AC30ZF09FM1.SCF screened BAC_end
(913 letters)
Database: Klactis 3X assemblage 11/02
1807 sequences; 10,358,551 total letters
Searching....done
Score E
Sequences producing significant alignments: (bits) Value
3x_Contig1783 1515 0.0
3x_Contig1560 117 4e-26
>3x_Contig1783
Length = 22123
Score = 1515 bits (764), Expect = 0.0
Identities = 789/795 (99%), Gaps = 2/795 (0%)
Strand = Plus / Plus
Query: 85 agttccttttgcgaagagatcagagctttggcactcaaagaaggttataacttagaaggt 144
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1259 agttccttttgcgaagagatcagagctttggcactcaaagaaggttataacttagaaggt 1318
Query: 145 gataaatcaccttcaagtaaaccttattttatgtcatggccaaaggaaatcgatgtaaat 204
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1319 gataaatcaccttcaagtaaaccttattttatgtcatggccaaaggaaatcgatgtaaat 1378
Query: 205 catcccaatttcgccttcttcacaaaactacagtttcaatatgataagagtttagaaaca 264
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1379 catcccaatttcgccttcttcacaaaactacagtttcaatatgataagagtttagaaaca 1438
Query: 265 attcttaacagttgttacttacaagaattgcagctggaccctactcgcattattgaaact 324
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1439 attcttaacagttgttacttacaagaattgcagctggaccctactcgcattattgaaact 1498
Query: 325 ctgcaacagcatttcaacaattcaattctccgatatgcagatatagaaaacatttctgac 384
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1499 ctgcaacagcatttcaacaattcaattctccgatatgcagatatagaaaacatttctgac 1558
Query: 385 gtcaaagatgagtctcccatgtcattcgacacagagcacgagtgtactgatacctcagaa 444
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1559 gtcaaagatgagtctcccatgtcattcgacacagagcacgagtgtactgatacctcagaa 1618
Query: 445 gatatttctgataaatcagaaatctcttcaacaaattcagataatccaattcaaaattgc 504
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1619 gatatttctgataaatcagaaatctcttcaacaaattcagataatccaattcaaaattgc 1678
Query: 505 tacccaacatataaaagatccttcatcaagcatgaatccagaggaatactggaaaagatc 564
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1679 tacccaacatataaaagatccttcatcaagcatgaatccagaggaatactggaaaagatc 1738
Query: 565 ttcaaagttaaacaatgtcctaatacctctgagcgattatacatcgctcagaaacttgat 624
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1739 ttcaaagttaaacaatgtcctaatacctctgagcgattatacatcgctcagaaacttgat 1798
Query: 625 ttgacaccatctcaagttaggatatggtttactaacaagagaatgagagctaaaaaac-t 683
|||||||||||||||||||||||||||||||||||||||||||||||||||||||||| |
Sbjct: 1799 ttgacaccatctcaagttaggatatggtttactaacaagagaatgagagctaaaaaacat 1858
Query: 684 actactggtaaaggaactaaacgtaaatcaaagaaatacccgagctaanatagctcgggt 743
|||||||||||||||||||||||||||||||||||||||||||||||| |||||||||||
Sbjct: 1859 actactggtaaaggaactaaacgtaaatcaaagaaatacccgagctaaaatagctcgggt 1918
Query: 744 ctatttgataattagacaatatacagtgctaatttctacctatacaactttcttatactt 803
||||||||||||||||||||||||||||||||||||||||||||||||||||||||||||
Sbjct: 1919 ctatttgataattagacaatatacagtgctaatttctacctatacaactttcttatactt 1978
Query: 804 catcactatcaccatatctgtaactattattgccttatttcacccaacctcttaagcttt 863
|||||||||||||||||||||||||| ||||| || ||||||||||||||||||||||||
Sbjct: 1979 catcactatcaccatatctgtaacta-tattgtctaatttcacccaacctcttaagcttt 2037
Query: 864 tcctggaacccaatg 878
||||||||| |||||
Sbjct: 2038 tcctggaacgcaatg 2052
>3x_Contig1560
Length = 9209
Score = 117 bits (59), Expect = 4e-26
Identities = 75/79 (94%), Gaps = 1/79 (1%)
Strand = Plus / Plus
Query: 800 acttcatcactatcaccatatctgtaactattattgccttatttcacccaacctcttaag 859
||||||||||||||||||||||||||||||| |||| || ||||||||||||||||||||
Sbjct: 8316 acttcatcactatcaccatatctgtaactat-attgtctaatttcacccaacctcttaag 8374
Query: 860 cttttcctggaacccaatg 878
||||||||||||| |||||
Sbjct: 8375 cttttcctggaacgcaatg 8393
Database: Klactis 3X assemblage 11/02
Posted date: Nov 27, 2002 12:23 PM
Number of letters in database: 10,358,551
Number of sequences in database: 1807
Lambda K H
1.37 0.711 1.31
Gapped
Lambda K H
1.37 0.711 1.31
Matrix: blastn matrix:1 -3
Gap Penalties: Existence: 5, Extension: 2
Number of Hits to DB: 6914
Number of Sequences: 1807
Number of extensions: 6914
Number of successful extensions: 43
Number of sequences better than 1.0e-20: 2
length of query: 913
length of database: 10,358,551
effective HSP length: 16
effective length of query: 897
effective length of database: 10,329,639
effective search space: 9265686183
effective search space used: 9265686183
T: 0
A: 40
X1: 6 (11.9 bits)
X2: 15 (29.7 bits)
S1: 12 (24.3 bits)
S2: 50 (99.6 bits)